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ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome

Chemical probes are important tools to investigate the function of proteins, evaluate their potential as therapeutic targets and provide chemical starting points for drug discovery. As a result, a growing federation of scientists aims to generate chemical probes for all human druggable proteins. A d...

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Detalles Bibliográficos
Autores principales: Liu, Lihua, Rovers, Evianne, Schapira, Matthieu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513561/
https://www.ncbi.nlm.nih.gov/pubmed/36164975
http://dx.doi.org/10.1093/database/baac088
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author Liu, Lihua
Rovers, Evianne
Schapira, Matthieu
author_facet Liu, Lihua
Rovers, Evianne
Schapira, Matthieu
author_sort Liu, Lihua
collection PubMed
description Chemical probes are important tools to investigate the function of proteins, evaluate their potential as therapeutic targets and provide chemical starting points for drug discovery. As a result, a growing federation of scientists aims to generate chemical probes for all human druggable proteins. A diverse array of data typically guides target selection and chemical probe discovery: information on protein function can help prioritize targets, domain architecture can provide insight on druggability, structural data enables molecular design and existing chemical ligands can serve as foundation or inspiration for chemical probe development. But these heterogenous data types are dispersed across a variety of public repositories that are difficult to cross-reference by non-experts. We developed ChemBioPort, an online resource that allows users to combine queries related to the ontology, domain architecture or name of human proteins to produce downloadable tables that integrate information on function, disease association, essentiality, tissue enrichment, domain architecture, structure and chemical ligands of proteins. Users can convert these tables into dendrograms reflecting sequence similarity, onto which they can graphically project all data types, linked via a mouse-click to their original repositories or published articles. This interface will support the growing community of chemical biologists, chemists, cell and structural biologists on their perilous journey from genes to medicines. Database URL: https://chembioport.thesgc.org
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spelling pubmed-95135612022-09-27 ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome Liu, Lihua Rovers, Evianne Schapira, Matthieu Database (Oxford) Original Article Chemical probes are important tools to investigate the function of proteins, evaluate their potential as therapeutic targets and provide chemical starting points for drug discovery. As a result, a growing federation of scientists aims to generate chemical probes for all human druggable proteins. A diverse array of data typically guides target selection and chemical probe discovery: information on protein function can help prioritize targets, domain architecture can provide insight on druggability, structural data enables molecular design and existing chemical ligands can serve as foundation or inspiration for chemical probe development. But these heterogenous data types are dispersed across a variety of public repositories that are difficult to cross-reference by non-experts. We developed ChemBioPort, an online resource that allows users to combine queries related to the ontology, domain architecture or name of human proteins to produce downloadable tables that integrate information on function, disease association, essentiality, tissue enrichment, domain architecture, structure and chemical ligands of proteins. Users can convert these tables into dendrograms reflecting sequence similarity, onto which they can graphically project all data types, linked via a mouse-click to their original repositories or published articles. This interface will support the growing community of chemical biologists, chemists, cell and structural biologists on their perilous journey from genes to medicines. Database URL: https://chembioport.thesgc.org Oxford University Press 2022-09-27 /pmc/articles/PMC9513561/ /pubmed/36164975 http://dx.doi.org/10.1093/database/baac088 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Original Article
Liu, Lihua
Rovers, Evianne
Schapira, Matthieu
ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title_full ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title_fullStr ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title_full_unstemmed ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title_short ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome
title_sort chembioport: an online portal to navigate the structure, function and chemical inhibition of the human proteome
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513561/
https://www.ncbi.nlm.nih.gov/pubmed/36164975
http://dx.doi.org/10.1093/database/baac088
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