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Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer

Faced with the high heterogeneity and poor prognosis of colorectal cancer (CRC), this study sought to find new predictive prognostic strategies to improve the situation. Cuproptosis is a novel cell death mechanism that relies on copper regulation. However, the role of cuproptosis-related gene (CRG)...

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Autores principales: Du, Yan, Lin, Yilin, Wang, Bo, Li, Yang, Xu, Duo, Gan, Lin, Xiong, Xiaoyu, Hou, Sen, Chen, Shuang, Shen, Zhanlong, Ye, Yingjiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513614/
https://www.ncbi.nlm.nih.gov/pubmed/36176287
http://dx.doi.org/10.3389/fgene.2022.976007
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author Du, Yan
Lin, Yilin
Wang, Bo
Li, Yang
Xu, Duo
Gan, Lin
Xiong, Xiaoyu
Hou, Sen
Chen, Shuang
Shen, Zhanlong
Ye, Yingjiang
author_facet Du, Yan
Lin, Yilin
Wang, Bo
Li, Yang
Xu, Duo
Gan, Lin
Xiong, Xiaoyu
Hou, Sen
Chen, Shuang
Shen, Zhanlong
Ye, Yingjiang
author_sort Du, Yan
collection PubMed
description Faced with the high heterogeneity and poor prognosis of colorectal cancer (CRC), this study sought to find new predictive prognostic strategies to improve the situation. Cuproptosis is a novel cell death mechanism that relies on copper regulation. However, the role of cuproptosis-related gene (CRG) in CRC remains to be elucidated. In this study, we comprehensively assessed the CRG landscape in CRC based on The Cancer Genome Atlas (TCGA). We identified differential expression and genetic alterations of CRG in CRC. CRG is highly correlated with initiation, progression, prognosis, and immune infiltration of CRC. We construct a risk score signature containing 3 CRGs based on LASSO. We explored the correlation of CRG-Score with clinicopathological features of CRC. Age, stage, and CRG-Score were integrated to construct a nomogram. The nomogram has robust predictive performance. We also understand the correlation of CRG-Score with CRC immune landscape. CRG-Score can effectively predict the immune landscape of CRC patients. Low-risk CRC patients have greater immunogenicity and higher immune checkpoint expression. Low-risk CRC patients may be better candidates for immunotherapy. At the same time, we also predicted more sensitive drugs in the high-risk CRC patients. In conclusion, the CRG risk score signature is a strong prognostic marker and may help provide new insights into the treatment of individuals with CRC.
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spelling pubmed-95136142022-09-28 Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer Du, Yan Lin, Yilin Wang, Bo Li, Yang Xu, Duo Gan, Lin Xiong, Xiaoyu Hou, Sen Chen, Shuang Shen, Zhanlong Ye, Yingjiang Front Genet Genetics Faced with the high heterogeneity and poor prognosis of colorectal cancer (CRC), this study sought to find new predictive prognostic strategies to improve the situation. Cuproptosis is a novel cell death mechanism that relies on copper regulation. However, the role of cuproptosis-related gene (CRG) in CRC remains to be elucidated. In this study, we comprehensively assessed the CRG landscape in CRC based on The Cancer Genome Atlas (TCGA). We identified differential expression and genetic alterations of CRG in CRC. CRG is highly correlated with initiation, progression, prognosis, and immune infiltration of CRC. We construct a risk score signature containing 3 CRGs based on LASSO. We explored the correlation of CRG-Score with clinicopathological features of CRC. Age, stage, and CRG-Score were integrated to construct a nomogram. The nomogram has robust predictive performance. We also understand the correlation of CRG-Score with CRC immune landscape. CRG-Score can effectively predict the immune landscape of CRC patients. Low-risk CRC patients have greater immunogenicity and higher immune checkpoint expression. Low-risk CRC patients may be better candidates for immunotherapy. At the same time, we also predicted more sensitive drugs in the high-risk CRC patients. In conclusion, the CRG risk score signature is a strong prognostic marker and may help provide new insights into the treatment of individuals with CRC. Frontiers Media S.A. 2022-09-13 /pmc/articles/PMC9513614/ /pubmed/36176287 http://dx.doi.org/10.3389/fgene.2022.976007 Text en Copyright © 2022 Du, Lin, Wang, Li, Xu, Gan, Xiong, Hou, Chen, Shen and Ye. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Du, Yan
Lin, Yilin
Wang, Bo
Li, Yang
Xu, Duo
Gan, Lin
Xiong, Xiaoyu
Hou, Sen
Chen, Shuang
Shen, Zhanlong
Ye, Yingjiang
Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title_full Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title_fullStr Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title_full_unstemmed Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title_short Cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
title_sort cuproptosis patterns and tumor immune infiltration characterization in colorectal cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513614/
https://www.ncbi.nlm.nih.gov/pubmed/36176287
http://dx.doi.org/10.3389/fgene.2022.976007
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