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Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders

The current inhabitants of the Canary Islands have a unique genetic makeup in the European diversity landscape due to the existence of African footprints from recent admixture events, especially of North African components (> 20%). The underrepresentation of non-Europeans in genetic studies and t...

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Autores principales: Díaz-de Usera, Ana, Rubio-Rodríguez, Luis A., Muñoz-Barrera, Adrián, Lorenzo-Salazar, Jose M., Guillen-Guio, Beatriz, Jáspez, David, Corrales, Almudena, Íñigo-Campos, Antonio, García-Olivares, Víctor, Rodríguez Pérez, María Del Cristo, Marcelino-Rodríguez, Itahisa, Cabrera de León, Antonio, González-Montelongo, Rafaela, Flores, Carlos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9514705/
https://www.ncbi.nlm.nih.gov/pubmed/36168029
http://dx.doi.org/10.1038/s41598-022-20442-x
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author Díaz-de Usera, Ana
Rubio-Rodríguez, Luis A.
Muñoz-Barrera, Adrián
Lorenzo-Salazar, Jose M.
Guillen-Guio, Beatriz
Jáspez, David
Corrales, Almudena
Íñigo-Campos, Antonio
García-Olivares, Víctor
Rodríguez Pérez, María Del Cristo
Marcelino-Rodríguez, Itahisa
Cabrera de León, Antonio
González-Montelongo, Rafaela
Flores, Carlos
author_facet Díaz-de Usera, Ana
Rubio-Rodríguez, Luis A.
Muñoz-Barrera, Adrián
Lorenzo-Salazar, Jose M.
Guillen-Guio, Beatriz
Jáspez, David
Corrales, Almudena
Íñigo-Campos, Antonio
García-Olivares, Víctor
Rodríguez Pérez, María Del Cristo
Marcelino-Rodríguez, Itahisa
Cabrera de León, Antonio
González-Montelongo, Rafaela
Flores, Carlos
author_sort Díaz-de Usera, Ana
collection PubMed
description The current inhabitants of the Canary Islands have a unique genetic makeup in the European diversity landscape due to the existence of African footprints from recent admixture events, especially of North African components (> 20%). The underrepresentation of non-Europeans in genetic studies and the sizable North African ancestry, which is nearly absent from all existing catalogs of worldwide genetic diversity, justify the need to develop CIRdb, a population-specific reference catalog of natural genetic variation in the Canary Islanders. Based on array genotyping of the selected unrelated donors and comparisons against available datasets from European, sub-Saharan, and North African populations, we illustrate the intermediate genetic differentiation of Canary Islanders between Europeans and North Africans and the existence of within-population differences that are likely driven by genetic isolation. Here we describe the overall design and the methods that are being implemented to further develop CIRdb. This resource will help to strengthen the implementation of Precision Medicine in this population by contributing to increase the diversity in genetic studies. Among others, this will translate into improved ability to fine map disease genes and simplify the identification of causal variants and estimate the prevalence of unattended Mendelian diseases.
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spelling pubmed-95147052022-09-28 Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders Díaz-de Usera, Ana Rubio-Rodríguez, Luis A. Muñoz-Barrera, Adrián Lorenzo-Salazar, Jose M. Guillen-Guio, Beatriz Jáspez, David Corrales, Almudena Íñigo-Campos, Antonio García-Olivares, Víctor Rodríguez Pérez, María Del Cristo Marcelino-Rodríguez, Itahisa Cabrera de León, Antonio González-Montelongo, Rafaela Flores, Carlos Sci Rep Article The current inhabitants of the Canary Islands have a unique genetic makeup in the European diversity landscape due to the existence of African footprints from recent admixture events, especially of North African components (> 20%). The underrepresentation of non-Europeans in genetic studies and the sizable North African ancestry, which is nearly absent from all existing catalogs of worldwide genetic diversity, justify the need to develop CIRdb, a population-specific reference catalog of natural genetic variation in the Canary Islanders. Based on array genotyping of the selected unrelated donors and comparisons against available datasets from European, sub-Saharan, and North African populations, we illustrate the intermediate genetic differentiation of Canary Islanders between Europeans and North Africans and the existence of within-population differences that are likely driven by genetic isolation. Here we describe the overall design and the methods that are being implemented to further develop CIRdb. This resource will help to strengthen the implementation of Precision Medicine in this population by contributing to increase the diversity in genetic studies. Among others, this will translate into improved ability to fine map disease genes and simplify the identification of causal variants and estimate the prevalence of unattended Mendelian diseases. Nature Publishing Group UK 2022-09-27 /pmc/articles/PMC9514705/ /pubmed/36168029 http://dx.doi.org/10.1038/s41598-022-20442-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Díaz-de Usera, Ana
Rubio-Rodríguez, Luis A.
Muñoz-Barrera, Adrián
Lorenzo-Salazar, Jose M.
Guillen-Guio, Beatriz
Jáspez, David
Corrales, Almudena
Íñigo-Campos, Antonio
García-Olivares, Víctor
Rodríguez Pérez, María Del Cristo
Marcelino-Rodríguez, Itahisa
Cabrera de León, Antonio
González-Montelongo, Rafaela
Flores, Carlos
Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title_full Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title_fullStr Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title_full_unstemmed Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title_short Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders
title_sort developing cirdb as a catalog of natural genetic variation in the canary islanders
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9514705/
https://www.ncbi.nlm.nih.gov/pubmed/36168029
http://dx.doi.org/10.1038/s41598-022-20442-x
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