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Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis

Background: NPM1 is highly expressed in a variety of solid tumors and promotes tumor development. However, there are few comprehensive studies on NPM1 analysis in gastrointestinal cancer. Methods: We used bioinformatics tools to study the expression difference of NPM1 between gastrointestinal cancer...

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Autores principales: Liu, Xu-Sheng, Liu, Chao, Zeng, Jing, Zeng, Dao-Bing, Chen, Yi-Jia, Tan, Fan, Gao, Yan, Liu, Xiao-Yu, Zhang, Yu, Zhang, Yao-Hua, Pei, Zhi-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9515486/
https://www.ncbi.nlm.nih.gov/pubmed/36188614
http://dx.doi.org/10.3389/fphar.2022.1010879
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author Liu, Xu-Sheng
Liu, Chao
Zeng, Jing
Zeng, Dao-Bing
Chen, Yi-Jia
Tan, Fan
Gao, Yan
Liu, Xiao-Yu
Zhang, Yu
Zhang, Yao-Hua
Pei, Zhi-Jun
author_facet Liu, Xu-Sheng
Liu, Chao
Zeng, Jing
Zeng, Dao-Bing
Chen, Yi-Jia
Tan, Fan
Gao, Yan
Liu, Xiao-Yu
Zhang, Yu
Zhang, Yao-Hua
Pei, Zhi-Jun
author_sort Liu, Xu-Sheng
collection PubMed
description Background: NPM1 is highly expressed in a variety of solid tumors and promotes tumor development. However, there are few comprehensive studies on NPM1 analysis in gastrointestinal cancer. Methods: We used bioinformatics tools to study the expression difference of NPM1 between gastrointestinal cancer and control group, and analyzed the relationship between its expression level and the diagnosis, prognosis, functional signaling pathway, immune infiltration, m6A and cuproptosis related genes of gastrointestinal cancer. At the same time, the expression difference of NPM1 between esophageal carcinoma (ESCA) samples and control samples was verified by in vitro experiments. Results: NPM1 was overexpressed in gastrointestinal cancer. In vitro experiments confirmed that the expression of NPM1 in ESCA samples was higher than that in normal samples. The expression of NPM1 has high accuracy in predicting the outcome of gastrointestinal cancer. The expression of NPM1 is closely related to the prognosis of multiple gastrointestinal cancers. Go and KEGG enrichment analysis showed that NPM1 co-expressed genes involved in a variety of biological functions. NPM1 expression is potentially associated with a variety of immune cell infiltration, m6A and cuproptosis related genes in gastrointestinal cancers. Conclusion: NPM1 can be used as a diagnostic and prognostic marker of gastrointestinal cancer, which is related to the immune cell infiltration and the regulation of m6A and cuproptosis.
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spelling pubmed-95154862022-09-29 Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis Liu, Xu-Sheng Liu, Chao Zeng, Jing Zeng, Dao-Bing Chen, Yi-Jia Tan, Fan Gao, Yan Liu, Xiao-Yu Zhang, Yu Zhang, Yao-Hua Pei, Zhi-Jun Front Pharmacol Pharmacology Background: NPM1 is highly expressed in a variety of solid tumors and promotes tumor development. However, there are few comprehensive studies on NPM1 analysis in gastrointestinal cancer. Methods: We used bioinformatics tools to study the expression difference of NPM1 between gastrointestinal cancer and control group, and analyzed the relationship between its expression level and the diagnosis, prognosis, functional signaling pathway, immune infiltration, m6A and cuproptosis related genes of gastrointestinal cancer. At the same time, the expression difference of NPM1 between esophageal carcinoma (ESCA) samples and control samples was verified by in vitro experiments. Results: NPM1 was overexpressed in gastrointestinal cancer. In vitro experiments confirmed that the expression of NPM1 in ESCA samples was higher than that in normal samples. The expression of NPM1 has high accuracy in predicting the outcome of gastrointestinal cancer. The expression of NPM1 is closely related to the prognosis of multiple gastrointestinal cancers. Go and KEGG enrichment analysis showed that NPM1 co-expressed genes involved in a variety of biological functions. NPM1 expression is potentially associated with a variety of immune cell infiltration, m6A and cuproptosis related genes in gastrointestinal cancers. Conclusion: NPM1 can be used as a diagnostic and prognostic marker of gastrointestinal cancer, which is related to the immune cell infiltration and the regulation of m6A and cuproptosis. Frontiers Media S.A. 2022-09-14 /pmc/articles/PMC9515486/ /pubmed/36188614 http://dx.doi.org/10.3389/fphar.2022.1010879 Text en Copyright © 2022 Liu, Liu, Zeng, Zeng, Chen, Tan, Gao, Liu, Zhang, Zhang and Pei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Liu, Xu-Sheng
Liu, Chao
Zeng, Jing
Zeng, Dao-Bing
Chen, Yi-Jia
Tan, Fan
Gao, Yan
Liu, Xiao-Yu
Zhang, Yu
Zhang, Yao-Hua
Pei, Zhi-Jun
Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title_full Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title_fullStr Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title_full_unstemmed Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title_short Nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6A and cuproptosis
title_sort nucleophosmin 1 is a prognostic marker of gastrointestinal cancer and is associated with m6a and cuproptosis
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9515486/
https://www.ncbi.nlm.nih.gov/pubmed/36188614
http://dx.doi.org/10.3389/fphar.2022.1010879
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