Cargando…

OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium

INTRODUCTION/BACKGROUND: The CLUSTER consortium aims to identify biomarkers and strata that improve personalised treatments for JIA/JIA-uveitis. By bringing together knowledge and data, CLUSTER can conduct novel analyses in this rare, heterogeneous disease. Data harmonisation across existing JIA coh...

Descripción completa

Detalles Bibliográficos
Autores principales: Lawson-Tovey, Saskia, Smith, Samantha, Geifman, Nophar, Shoop-Worrall, Stephanie, Ng, Sandra, Barnes, Michael, Wedderburn, Lucy, Hyrich, Kimme
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9515876/
http://dx.doi.org/10.1093/rap/rkac066.031
_version_ 1784798587124711424
author Lawson-Tovey, Saskia
Smith, Samantha
Geifman, Nophar
Shoop-Worrall, Stephanie
Ng, Sandra
Barnes, Michael
Wedderburn, Lucy
Hyrich, Kimme
author_facet Lawson-Tovey, Saskia
Smith, Samantha
Geifman, Nophar
Shoop-Worrall, Stephanie
Ng, Sandra
Barnes, Michael
Wedderburn, Lucy
Hyrich, Kimme
author_sort Lawson-Tovey, Saskia
collection PubMed
description INTRODUCTION/BACKGROUND: The CLUSTER consortium aims to identify biomarkers and strata that improve personalised treatments for JIA/JIA-uveitis. By bringing together knowledge and data, CLUSTER can conduct novel analyses in this rare, heterogeneous disease. Data harmonisation across existing JIA cohorts facilitates new, larger datasets that would otherwise take years to collect; however, challenges exist as datasets are often collected autonomously. Here we present progress towards a large-scale, unique JIA data resource, bringing together treatment data from 4 real-world JIA treatment studies. DESCRIPTION/METHOD: Four studies (CAPS, CHARMS, BCRD and BSPAR-ETN; the latter two being part of the UK JIA Biologics register) contributed data into CLUSTER. We created two clinical datasets of JIA patients starting first-line methotrexate (MTX) or tumour necrosis factor inhibitors (TNFi). Variables were selected based on a previously developed core dataset, accounting for different levels of granularity across studies. The same inclusion and exclusion criteria were agreed for both datasets, designed to allow for combined analysis of these. OpenPseudonymiser software encrypted NHS numbers - these were matched cross-study to identify duplicates and checked against known duplicate lists. Errors in NHS numbers and existing duplicate matches were identified and corrected. Each NHS number was assigned a CLUSTER ID, meaning 1 child has the same ID across all relevant studies such that children contributing similar data across multiple studies could be identified. DISCUSSION/RESULTS: A total of 7013 records (from 5435 individuals) were identified; of which 2882 (41%, corresponding to 1304 individuals) represented the same child across >1 study. 197 individuals had duplicate records within 1 study, 961 in 2 studies, 142 in 3, and 4 children had duplicate records in all 4 studies. After removing 350 MTX and 605 TNFi duplicate entries, the final datasets contain 2899 and 2401 unique MTX and TNFi patients respectively; 1018 are in both datasets having received both treatments. Missingness across core outcome variables ranged from 10% (active joint count MTX timepoint 2) to 60% (physician VAS TNFi timepoint 2) and was not improved through combining datasets with duplicate entries. Specificity in some variables was lost to allow integration by combining data using least common denominators (e.g. ethnicity captured as Caucasian/Non-Caucasian, despite more specific categories available in some studies). KEY LEARNING POINTS/CONCLUSION: Combining data across studies has achieved dataset sizes rarely seen in JIA, which is invaluable to progressing research into personalised treatments and disease outcomes.  However, losing specificity in some variables and missingness (a known challenge in observational data) and their impact on future analyses requires further consideration. Ongoing work includes identifying patients with both clinical and biological data that can be combined for more in-depth analyses. Both datasets are available for researchers to use via the CLUSTER Consortium Data Management Committee.
format Online
Article
Text
id pubmed-9515876
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-95158762022-09-28 OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium Lawson-Tovey, Saskia Smith, Samantha Geifman, Nophar Shoop-Worrall, Stephanie Ng, Sandra Barnes, Michael Wedderburn, Lucy Hyrich, Kimme Rheumatol Adv Pract Oral Presentations INTRODUCTION/BACKGROUND: The CLUSTER consortium aims to identify biomarkers and strata that improve personalised treatments for JIA/JIA-uveitis. By bringing together knowledge and data, CLUSTER can conduct novel analyses in this rare, heterogeneous disease. Data harmonisation across existing JIA cohorts facilitates new, larger datasets that would otherwise take years to collect; however, challenges exist as datasets are often collected autonomously. Here we present progress towards a large-scale, unique JIA data resource, bringing together treatment data from 4 real-world JIA treatment studies. DESCRIPTION/METHOD: Four studies (CAPS, CHARMS, BCRD and BSPAR-ETN; the latter two being part of the UK JIA Biologics register) contributed data into CLUSTER. We created two clinical datasets of JIA patients starting first-line methotrexate (MTX) or tumour necrosis factor inhibitors (TNFi). Variables were selected based on a previously developed core dataset, accounting for different levels of granularity across studies. The same inclusion and exclusion criteria were agreed for both datasets, designed to allow for combined analysis of these. OpenPseudonymiser software encrypted NHS numbers - these were matched cross-study to identify duplicates and checked against known duplicate lists. Errors in NHS numbers and existing duplicate matches were identified and corrected. Each NHS number was assigned a CLUSTER ID, meaning 1 child has the same ID across all relevant studies such that children contributing similar data across multiple studies could be identified. DISCUSSION/RESULTS: A total of 7013 records (from 5435 individuals) were identified; of which 2882 (41%, corresponding to 1304 individuals) represented the same child across >1 study. 197 individuals had duplicate records within 1 study, 961 in 2 studies, 142 in 3, and 4 children had duplicate records in all 4 studies. After removing 350 MTX and 605 TNFi duplicate entries, the final datasets contain 2899 and 2401 unique MTX and TNFi patients respectively; 1018 are in both datasets having received both treatments. Missingness across core outcome variables ranged from 10% (active joint count MTX timepoint 2) to 60% (physician VAS TNFi timepoint 2) and was not improved through combining datasets with duplicate entries. Specificity in some variables was lost to allow integration by combining data using least common denominators (e.g. ethnicity captured as Caucasian/Non-Caucasian, despite more specific categories available in some studies). KEY LEARNING POINTS/CONCLUSION: Combining data across studies has achieved dataset sizes rarely seen in JIA, which is invaluable to progressing research into personalised treatments and disease outcomes.  However, losing specificity in some variables and missingness (a known challenge in observational data) and their impact on future analyses requires further consideration. Ongoing work includes identifying patients with both clinical and biological data that can be combined for more in-depth analyses. Both datasets are available for researchers to use via the CLUSTER Consortium Data Management Committee. Oxford University Press 2022-09-28 /pmc/articles/PMC9515876/ http://dx.doi.org/10.1093/rap/rkac066.031 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the British Society for Rheumatology. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Oral Presentations
Lawson-Tovey, Saskia
Smith, Samantha
Geifman, Nophar
Shoop-Worrall, Stephanie
Ng, Sandra
Barnes, Michael
Wedderburn, Lucy
Hyrich, Kimme
OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title_full OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title_fullStr OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title_full_unstemmed OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title_short OA31 Successes and challenges in harmonising 4 national Juvenile Idiopathic Arthritis cohorts: an example from CLUSTER consortium
title_sort oa31 successes and challenges in harmonising 4 national juvenile idiopathic arthritis cohorts: an example from cluster consortium
topic Oral Presentations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9515876/
http://dx.doi.org/10.1093/rap/rkac066.031
work_keys_str_mv AT lawsontoveysaskia oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT smithsamantha oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT geifmannophar oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT shoopworrallstephanie oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT ngsandra oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT barnesmichael oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT wedderburnlucy oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium
AT hyrichkimme oa31successesandchallengesinharmonising4nationaljuvenileidiopathicarthritiscohortsanexamplefromclusterconsortium