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Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India
Metagenomic analysis of stone microbiome from samples collected in New England, USA and Tamil Nadu, India identified numerous Actinobacteria including Geodermatphilaceae. A culture-dependent approach was performed as a companion study with this culture-independent metagenomic analysis of these stone...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Ivyspring International Publisher
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516006/ https://www.ncbi.nlm.nih.gov/pubmed/36176899 http://dx.doi.org/10.7150/jgen.76121 |
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author | Ennis, Nathaniel J. Dharumadurai, Dhanasekaran Sevigny, Joseph L. Wilmot, Ryan Alnaimat, Sulaiman M. Bryce, Julia G. Thomas, W. Kelley Tisa, Louis S. |
author_facet | Ennis, Nathaniel J. Dharumadurai, Dhanasekaran Sevigny, Joseph L. Wilmot, Ryan Alnaimat, Sulaiman M. Bryce, Julia G. Thomas, W. Kelley Tisa, Louis S. |
author_sort | Ennis, Nathaniel J. |
collection | PubMed |
description | Metagenomic analysis of stone microbiome from samples collected in New England, USA and Tamil Nadu, India identified numerous Actinobacteria including Geodermatphilaceae. A culture-dependent approach was performed as a companion study with this culture-independent metagenomic analysis of these stone samples and resulted in the isolation of eleven Geodermatphilaceae strains (2 Geodermatophilus and 9 Blastococcus strains). The genomes of the 11 Geodermatphilaceae strains were sequenced and analyzed. The genomes for the two Geodermatophilus isolates, DF1-2 and TF2-6, were 4.45 and 4.75 Mb, respectively, while the Blastococcus genomes ranged in size from 3.98 to 5.48 Mb. Phylogenetic analysis, digital DNA:DNA hybridization (dDDH), and comparisons of the average nucleotide identities (ANI) suggest the isolates represent novel Geodermatophilus and Blastococcus species. Functional analysis of the Geodermatphilaceae genomes provides insight on the stone microbiome niche. |
format | Online Article Text |
id | pubmed-9516006 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-95160062022-09-28 Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India Ennis, Nathaniel J. Dharumadurai, Dhanasekaran Sevigny, Joseph L. Wilmot, Ryan Alnaimat, Sulaiman M. Bryce, Julia G. Thomas, W. Kelley Tisa, Louis S. J Genomics Research Paper Metagenomic analysis of stone microbiome from samples collected in New England, USA and Tamil Nadu, India identified numerous Actinobacteria including Geodermatphilaceae. A culture-dependent approach was performed as a companion study with this culture-independent metagenomic analysis of these stone samples and resulted in the isolation of eleven Geodermatphilaceae strains (2 Geodermatophilus and 9 Blastococcus strains). The genomes of the 11 Geodermatphilaceae strains were sequenced and analyzed. The genomes for the two Geodermatophilus isolates, DF1-2 and TF2-6, were 4.45 and 4.75 Mb, respectively, while the Blastococcus genomes ranged in size from 3.98 to 5.48 Mb. Phylogenetic analysis, digital DNA:DNA hybridization (dDDH), and comparisons of the average nucleotide identities (ANI) suggest the isolates represent novel Geodermatophilus and Blastococcus species. Functional analysis of the Geodermatphilaceae genomes provides insight on the stone microbiome niche. Ivyspring International Publisher 2022-09-21 /pmc/articles/PMC9516006/ /pubmed/36176899 http://dx.doi.org/10.7150/jgen.76121 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Ennis, Nathaniel J. Dharumadurai, Dhanasekaran Sevigny, Joseph L. Wilmot, Ryan Alnaimat, Sulaiman M. Bryce, Julia G. Thomas, W. Kelley Tisa, Louis S. Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title | Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title_full | Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title_fullStr | Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title_full_unstemmed | Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title_short | Draft Genomes Sequences of 11 Geodermatophilaceae Strains Isolated from Building Stones from New England and Indian Stone Ruins found at historic sites in Tamil Nadu, India |
title_sort | draft genomes sequences of 11 geodermatophilaceae strains isolated from building stones from new england and indian stone ruins found at historic sites in tamil nadu, india |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516006/ https://www.ncbi.nlm.nih.gov/pubmed/36176899 http://dx.doi.org/10.7150/jgen.76121 |
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