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Molecular Docking, Validation, Dynamics Simulations, and Pharmacokinetic Prediction of Phytochemicals Isolated From Croton dichogamus Against the HIV-1 Reverse Transcriptase
The human immunodeficiency virus (HIV) infection and the associated acquired immune deficiency syndrome (AIDS) remain global challenges even after decades of successful treatment, with eastern and southern Africa still bearing the highest burden of disease. Following a thorough computational study,...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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SAGE Publications
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516429/ https://www.ncbi.nlm.nih.gov/pubmed/36185760 http://dx.doi.org/10.1177/11779322221125605 |
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author | Terefe, Ermias Mergia Ghosh, Arabinda |
author_facet | Terefe, Ermias Mergia Ghosh, Arabinda |
author_sort | Terefe, Ermias Mergia |
collection | PubMed |
description | The human immunodeficiency virus (HIV) infection and the associated acquired immune deficiency syndrome (AIDS) remain global challenges even after decades of successful treatment, with eastern and southern Africa still bearing the highest burden of disease. Following a thorough computational study, we report top 10 phytochemicals isolated from Croton dichogamus as potent reverse transcriptase inhibitors. The pentacyclic triterpenoid, aleuritolic acid (L12) has displayed best docking pose with binding energy of -8.48 kcal/mol and Ki of 0.61 μM making it superior in binding efficiency when compared to all docked compounds including the FDA-approved drugs. Other phytochemicals such as crotoxide A, crothalimene A, crotodichogamoin B and crotonolide E have also displayed strong binding energies. These compounds could further be investigated as potential antiretroviral medication. |
format | Online Article Text |
id | pubmed-9516429 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-95164292022-09-29 Molecular Docking, Validation, Dynamics Simulations, and Pharmacokinetic Prediction of Phytochemicals Isolated From Croton dichogamus Against the HIV-1 Reverse Transcriptase Terefe, Ermias Mergia Ghosh, Arabinda Bioinform Biol Insights Original Research Article The human immunodeficiency virus (HIV) infection and the associated acquired immune deficiency syndrome (AIDS) remain global challenges even after decades of successful treatment, with eastern and southern Africa still bearing the highest burden of disease. Following a thorough computational study, we report top 10 phytochemicals isolated from Croton dichogamus as potent reverse transcriptase inhibitors. The pentacyclic triterpenoid, aleuritolic acid (L12) has displayed best docking pose with binding energy of -8.48 kcal/mol and Ki of 0.61 μM making it superior in binding efficiency when compared to all docked compounds including the FDA-approved drugs. Other phytochemicals such as crotoxide A, crothalimene A, crotodichogamoin B and crotonolide E have also displayed strong binding energies. These compounds could further be investigated as potential antiretroviral medication. SAGE Publications 2022-09-26 /pmc/articles/PMC9516429/ /pubmed/36185760 http://dx.doi.org/10.1177/11779322221125605 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Article Terefe, Ermias Mergia Ghosh, Arabinda Molecular Docking, Validation, Dynamics Simulations, and Pharmacokinetic Prediction of Phytochemicals Isolated From Croton dichogamus Against the HIV-1 Reverse Transcriptase |
title | Molecular Docking, Validation, Dynamics Simulations, and
Pharmacokinetic Prediction of Phytochemicals Isolated From Croton
dichogamus Against the HIV-1 Reverse Transcriptase |
title_full | Molecular Docking, Validation, Dynamics Simulations, and
Pharmacokinetic Prediction of Phytochemicals Isolated From Croton
dichogamus Against the HIV-1 Reverse Transcriptase |
title_fullStr | Molecular Docking, Validation, Dynamics Simulations, and
Pharmacokinetic Prediction of Phytochemicals Isolated From Croton
dichogamus Against the HIV-1 Reverse Transcriptase |
title_full_unstemmed | Molecular Docking, Validation, Dynamics Simulations, and
Pharmacokinetic Prediction of Phytochemicals Isolated From Croton
dichogamus Against the HIV-1 Reverse Transcriptase |
title_short | Molecular Docking, Validation, Dynamics Simulations, and
Pharmacokinetic Prediction of Phytochemicals Isolated From Croton
dichogamus Against the HIV-1 Reverse Transcriptase |
title_sort | molecular docking, validation, dynamics simulations, and
pharmacokinetic prediction of phytochemicals isolated from croton
dichogamus against the hiv-1 reverse transcriptase |
topic | Original Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516429/ https://www.ncbi.nlm.nih.gov/pubmed/36185760 http://dx.doi.org/10.1177/11779322221125605 |
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