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Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray

Due to the outbreak of COVID-19 disease globally, countries around the world are facing shortages of resources (i.e. testing kits, medicine). A quick diagnosis of COVID-19 and isolating patients are crucial in curbing the pandemic, especially in rural areas. This is because the disease is highly con...

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Autores principales: Koh, Shaline Jia Thean, Nafea, Marwan, Nugroho, Hermawan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516511/
https://www.ncbi.nlm.nih.gov/pubmed/36187081
http://dx.doi.org/10.1007/s43674-022-00044-w
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author Koh, Shaline Jia Thean
Nafea, Marwan
Nugroho, Hermawan
author_facet Koh, Shaline Jia Thean
Nafea, Marwan
Nugroho, Hermawan
author_sort Koh, Shaline Jia Thean
collection PubMed
description Due to the outbreak of COVID-19 disease globally, countries around the world are facing shortages of resources (i.e. testing kits, medicine). A quick diagnosis of COVID-19 and isolating patients are crucial in curbing the pandemic, especially in rural areas. This is because the disease is highly contagious and can spread easily. To assist doctors, several studies have proposed an initial detection of COVID-19 cases using radiological images. In this paper, we propose an alternative method for analyzing chest X-ray images to provide an efficient and accurate diagnosis of COVID-19 which can run on edge devices. The approach acts as an enabler for the deep learning model to be deployed in practical application. Here, the convolutional neural network models which are fine-tuned to predict COVID-19 and pneumonia infection from chest X-ray images are developed by adopting transfer learning techniques. The developed model yielded an accuracy of 98.13%, sensitivity of 97.7%, and specificity of 99.1%. To highlight the important regions in the X-ray images which directs the model to its decision/prediction, we adopted the Gradient Class Activation Map (Grad-CAM). The generated heat maps from the Grad-CAM were then compared with the annotated X-ray images by board-certified radiologists. Results showed that the findings strongly correlate with clinical evidence. For practical deployment, we implemented the trained model in edge devices (NCS2) and this has achieved an improvement of 90% in inference speed compared to CPU. This shows that the developed model has the potential to be implemented on the edge, for example in primary care clinics and rural areas which are not well-equipped or do not have access to stable internet connections.
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spelling pubmed-95165112022-09-28 Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray Koh, Shaline Jia Thean Nafea, Marwan Nugroho, Hermawan Adv Comput Intell Original Article Due to the outbreak of COVID-19 disease globally, countries around the world are facing shortages of resources (i.e. testing kits, medicine). A quick diagnosis of COVID-19 and isolating patients are crucial in curbing the pandemic, especially in rural areas. This is because the disease is highly contagious and can spread easily. To assist doctors, several studies have proposed an initial detection of COVID-19 cases using radiological images. In this paper, we propose an alternative method for analyzing chest X-ray images to provide an efficient and accurate diagnosis of COVID-19 which can run on edge devices. The approach acts as an enabler for the deep learning model to be deployed in practical application. Here, the convolutional neural network models which are fine-tuned to predict COVID-19 and pneumonia infection from chest X-ray images are developed by adopting transfer learning techniques. The developed model yielded an accuracy of 98.13%, sensitivity of 97.7%, and specificity of 99.1%. To highlight the important regions in the X-ray images which directs the model to its decision/prediction, we adopted the Gradient Class Activation Map (Grad-CAM). The generated heat maps from the Grad-CAM were then compared with the annotated X-ray images by board-certified radiologists. Results showed that the findings strongly correlate with clinical evidence. For practical deployment, we implemented the trained model in edge devices (NCS2) and this has achieved an improvement of 90% in inference speed compared to CPU. This shows that the developed model has the potential to be implemented on the edge, for example in primary care clinics and rural areas which are not well-equipped or do not have access to stable internet connections. Springer International Publishing 2022-09-28 2022 /pmc/articles/PMC9516511/ /pubmed/36187081 http://dx.doi.org/10.1007/s43674-022-00044-w Text en © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Koh, Shaline Jia Thean
Nafea, Marwan
Nugroho, Hermawan
Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title_full Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title_fullStr Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title_full_unstemmed Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title_short Towards edge devices implementation: deep learning model with visualization for COVID-19 prediction from chest X-ray
title_sort towards edge devices implementation: deep learning model with visualization for covid-19 prediction from chest x-ray
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9516511/
https://www.ncbi.nlm.nih.gov/pubmed/36187081
http://dx.doi.org/10.1007/s43674-022-00044-w
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