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QCforever: A Quantum Chemistry Wrapper for Everyone to Use in Black-Box Optimization
[Image: see text] To obtain observable physical or molecular properties such as ionization potential and fluorescent wavelength with quantum chemical (QC) computation, multi-step computation manipulated by a human is required. Hence, automating the multi-step computational process and making it a bl...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518232/ https://www.ncbi.nlm.nih.gov/pubmed/36074116 http://dx.doi.org/10.1021/acs.jcim.2c00812 |
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author | Sumita, Masato Terayama, Kei Tamura, Ryo Tsuda, Koji |
author_facet | Sumita, Masato Terayama, Kei Tamura, Ryo Tsuda, Koji |
author_sort | Sumita, Masato |
collection | PubMed |
description | [Image: see text] To obtain observable physical or molecular properties such as ionization potential and fluorescent wavelength with quantum chemical (QC) computation, multi-step computation manipulated by a human is required. Hence, automating the multi-step computational process and making it a black box that can be handled by anybody are important for effective database construction and fast realistic material design through the framework of black-box optimization where machine learning algorithms are introduced as a predictor. Here, we propose a Python library, QCforever, to automate the computation of some molecular properties and chemical phenomena induced by molecules. This tool just requires a molecule file for providing its observable properties, automating the computation process of molecular properties (for ionization potential, fluorescence, etc.) and output analysis for providing their multi-values for evaluating a molecule. Incorporating the tool in black-box optimization, we can explore molecules that have properties we desired within the limitation of QC computation. |
format | Online Article Text |
id | pubmed-9518232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95182322023-09-08 QCforever: A Quantum Chemistry Wrapper for Everyone to Use in Black-Box Optimization Sumita, Masato Terayama, Kei Tamura, Ryo Tsuda, Koji J Chem Inf Model [Image: see text] To obtain observable physical or molecular properties such as ionization potential and fluorescent wavelength with quantum chemical (QC) computation, multi-step computation manipulated by a human is required. Hence, automating the multi-step computational process and making it a black box that can be handled by anybody are important for effective database construction and fast realistic material design through the framework of black-box optimization where machine learning algorithms are introduced as a predictor. Here, we propose a Python library, QCforever, to automate the computation of some molecular properties and chemical phenomena induced by molecules. This tool just requires a molecule file for providing its observable properties, automating the computation process of molecular properties (for ionization potential, fluorescence, etc.) and output analysis for providing their multi-values for evaluating a molecule. Incorporating the tool in black-box optimization, we can explore molecules that have properties we desired within the limitation of QC computation. American Chemical Society 2022-09-08 2022-09-26 /pmc/articles/PMC9518232/ /pubmed/36074116 http://dx.doi.org/10.1021/acs.jcim.2c00812 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Sumita, Masato Terayama, Kei Tamura, Ryo Tsuda, Koji QCforever: A Quantum Chemistry Wrapper for Everyone to Use in Black-Box Optimization |
title | QCforever: A Quantum
Chemistry Wrapper for Everyone
to Use in Black-Box Optimization |
title_full | QCforever: A Quantum
Chemistry Wrapper for Everyone
to Use in Black-Box Optimization |
title_fullStr | QCforever: A Quantum
Chemistry Wrapper for Everyone
to Use in Black-Box Optimization |
title_full_unstemmed | QCforever: A Quantum
Chemistry Wrapper for Everyone
to Use in Black-Box Optimization |
title_short | QCforever: A Quantum
Chemistry Wrapper for Everyone
to Use in Black-Box Optimization |
title_sort | qcforever: a quantum
chemistry wrapper for everyone
to use in black-box optimization |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518232/ https://www.ncbi.nlm.nih.gov/pubmed/36074116 http://dx.doi.org/10.1021/acs.jcim.2c00812 |
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