Cargando…

The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position

Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this...

Descripción completa

Detalles Bibliográficos
Autores principales: Wong, Xue Jing, Law, Douglas, Wang, Zheng-Feng, Ramaiya, Shiamala Devi, Lee, Shiou Yih
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518260/
https://www.ncbi.nlm.nih.gov/pubmed/36188663
http://dx.doi.org/10.1080/23802359.2022.2123256
_version_ 1784799139562782720
author Wong, Xue Jing
Law, Douglas
Wang, Zheng-Feng
Ramaiya, Shiamala Devi
Lee, Shiou Yih
author_facet Wong, Xue Jing
Law, Douglas
Wang, Zheng-Feng
Ramaiya, Shiamala Devi
Lee, Shiou Yih
author_sort Wong, Xue Jing
collection PubMed
description Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this species in the wild has put its survival in jeopardy. Conservation efforts are required for this species, which are limited. In this study, the complete chloroplast (cp) genome of D. oxleyanus was assembled and characterized as a genomic resource for conservation programs. The complete cp genome size was 164,831 bp in length, with a pair of inverted repeats of 23,782 bp each, separating the 96,446-bp large and the 20,823-bp small single copies. A total of 135 genes were predicted, which consisted of 90 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 35.8%. The phylogenetic analysis based on the maximum-likelihood and Bayesian inference methods revealed that D. oxleyanus is closely related to D. zibethinus. The genomic data obtained will be useful for future studies of Malvaceae’s phylogenetics and evolution.
format Online
Article
Text
id pubmed-9518260
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-95182602022-09-29 The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position Wong, Xue Jing Law, Douglas Wang, Zheng-Feng Ramaiya, Shiamala Devi Lee, Shiou Yih Mitochondrial DNA B Resour Mitogenome Announcement Durio oxleyanus (Griff) of Malvaceae is considered a natural heritage by the countries that produce it, including Peninsular Malaysia, Sumatra, and Borneo. Even though the species is regarded as a commercially valuable fruit, cultivation of this species is uncommon. The dwindling population of this species in the wild has put its survival in jeopardy. Conservation efforts are required for this species, which are limited. In this study, the complete chloroplast (cp) genome of D. oxleyanus was assembled and characterized as a genomic resource for conservation programs. The complete cp genome size was 164,831 bp in length, with a pair of inverted repeats of 23,782 bp each, separating the 96,446-bp large and the 20,823-bp small single copies. A total of 135 genes were predicted, which consisted of 90 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC content was 35.8%. The phylogenetic analysis based on the maximum-likelihood and Bayesian inference methods revealed that D. oxleyanus is closely related to D. zibethinus. The genomic data obtained will be useful for future studies of Malvaceae’s phylogenetics and evolution. Taylor & Francis 2022-09-23 /pmc/articles/PMC9518260/ /pubmed/36188663 http://dx.doi.org/10.1080/23802359.2022.2123256 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wong, Xue Jing
Law, Douglas
Wang, Zheng-Feng
Ramaiya, Shiamala Devi
Lee, Shiou Yih
The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title_full The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title_fullStr The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title_full_unstemmed The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title_short The complete chloroplast genome sequence of Durio oxleyanus (Malvaceae) and its phylogenetic position
title_sort complete chloroplast genome sequence of durio oxleyanus (malvaceae) and its phylogenetic position
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518260/
https://www.ncbi.nlm.nih.gov/pubmed/36188663
http://dx.doi.org/10.1080/23802359.2022.2123256
work_keys_str_mv AT wongxuejing thecompletechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT lawdouglas thecompletechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT wangzhengfeng thecompletechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT ramaiyashiamaladevi thecompletechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT leeshiouyih thecompletechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT wongxuejing completechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT lawdouglas completechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT wangzhengfeng completechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT ramaiyashiamaladevi completechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition
AT leeshiouyih completechloroplastgenomesequenceofduriooxleyanusmalvaceaeanditsphylogeneticposition