Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China

Litsea honghoensis Liou is an endangered tree endemic to south China. In this study, the first complete plastid genome of L. honghoensis was presented, which had a length of 152,605 base pairs (bp) with a GC content of 39.20%. The genome consisted of a large single-copy (LSC) region of 93,560 bp, a...

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Autores principales: Han, Lihong, Cai, Jian, Chen, Huanhuan, Liu, Chao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518278/
https://www.ncbi.nlm.nih.gov/pubmed/36188668
http://dx.doi.org/10.1080/23802359.2022.2122884
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author Han, Lihong
Cai, Jian
Chen, Huanhuan
Liu, Chao
author_facet Han, Lihong
Cai, Jian
Chen, Huanhuan
Liu, Chao
author_sort Han, Lihong
collection PubMed
description Litsea honghoensis Liou is an endangered tree endemic to south China. In this study, the first complete plastid genome of L. honghoensis was presented, which had a length of 152,605 base pairs (bp) with a GC content of 39.20%. The genome consisted of a large single-copy (LSC) region of 93,560 bp, a small single-copy (SSC) region of 18,905 bp, and two inverted repeat regions (IRa and IRb) of 20,070 bp. There were 125 genes in the plastid genome, including 81 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Phylogenomic analysis based on 52 complete plastomes of Laureae in the family Lauraceae supports the close relationships among L. honghoensis, Lindera communis, Lindera nacusua, Lindera angustifolia, and Lindera glauca.
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spelling pubmed-95182782022-09-29 Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China Han, Lihong Cai, Jian Chen, Huanhuan Liu, Chao Mitochondrial DNA B Resour Mitogenome Announcement Litsea honghoensis Liou is an endangered tree endemic to south China. In this study, the first complete plastid genome of L. honghoensis was presented, which had a length of 152,605 base pairs (bp) with a GC content of 39.20%. The genome consisted of a large single-copy (LSC) region of 93,560 bp, a small single-copy (SSC) region of 18,905 bp, and two inverted repeat regions (IRa and IRb) of 20,070 bp. There were 125 genes in the plastid genome, including 81 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Phylogenomic analysis based on 52 complete plastomes of Laureae in the family Lauraceae supports the close relationships among L. honghoensis, Lindera communis, Lindera nacusua, Lindera angustifolia, and Lindera glauca. Taylor & Francis 2022-09-23 /pmc/articles/PMC9518278/ /pubmed/36188668 http://dx.doi.org/10.1080/23802359.2022.2122884 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Han, Lihong
Cai, Jian
Chen, Huanhuan
Liu, Chao
Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title_full Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title_fullStr Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title_full_unstemmed Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title_short Complete plastid genome of Litsea honghoensis Liou 1933, an endangered evergreen species in China
title_sort complete plastid genome of litsea honghoensis liou 1933, an endangered evergreen species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9518278/
https://www.ncbi.nlm.nih.gov/pubmed/36188668
http://dx.doi.org/10.1080/23802359.2022.2122884
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