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Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM)
Despite tremendous research advances in detecting Alzheimer's disease (AD), traditional diagnostic tests remain expensive, time-consuming or invasive. The search for a low-cost, rapid, and minimally invasive test has marked a new era of research and technological developments toward establishin...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9519548/ https://www.ncbi.nlm.nih.gov/pubmed/36171258 http://dx.doi.org/10.1038/s41598-022-20611-y |
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author | dos Santos, Ricardo Fernandes Paraskevaidi, Maria Mann, David M. A. Allsop, David Santos, Marfran C. D. Morais, Camilo L. M. Lima, Kássio M. G. |
author_facet | dos Santos, Ricardo Fernandes Paraskevaidi, Maria Mann, David M. A. Allsop, David Santos, Marfran C. D. Morais, Camilo L. M. Lima, Kássio M. G. |
author_sort | dos Santos, Ricardo Fernandes |
collection | PubMed |
description | Despite tremendous research advances in detecting Alzheimer's disease (AD), traditional diagnostic tests remain expensive, time-consuming or invasive. The search for a low-cost, rapid, and minimally invasive test has marked a new era of research and technological developments toward establishing blood-based AD biomarkers. The current study has employed excitation-emission matrices (EEM) of fluorescence spectroscopy combined with machine learning to diagnose AD using blood plasma samples from 230 individuals (83 AD patients from 147 healthy controls). To evaluate the performance of the classification algorithms, we calculated the commonly used figures of merit (accuracy, sensitivity and specificity) and figures of merit that take into account the samples unbalance and the discrimination power of the models, as F(2)-score (F(2)), Matthews correlation coefficient (MCC) and test effectiveness ([Formula: see text] ). The classification models achieved satisfactory results: Parallel Factor Analysis with Quadratic Discriminant Analysis (PARAFAC-QDA) with 83.33% sensitivity, 100% specificity, 86.21% F(2); and Tucker3-QDA with 91.67% sensitivity, 95.45% specificity and 91.67% F(2). In addition, the classifiers show high overall performance with 94.12% accuracy and 0.87 MCC. Regarding the discrimination power between healthy and AD patients, the classification algorithms showed high effectiveness with the mean scores separated by three or more standard deviations. The PARAFAC's spectral profiles and the wavelength values from both models loading profiles can be used in future research to relate this information to plasma AD biomarkers. Our results point to a rapid, low-cost and minimally invasive blood-based method for AD diagnosis. |
format | Online Article Text |
id | pubmed-9519548 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-95195482022-09-30 Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) dos Santos, Ricardo Fernandes Paraskevaidi, Maria Mann, David M. A. Allsop, David Santos, Marfran C. D. Morais, Camilo L. M. Lima, Kássio M. G. Sci Rep Article Despite tremendous research advances in detecting Alzheimer's disease (AD), traditional diagnostic tests remain expensive, time-consuming or invasive. The search for a low-cost, rapid, and minimally invasive test has marked a new era of research and technological developments toward establishing blood-based AD biomarkers. The current study has employed excitation-emission matrices (EEM) of fluorescence spectroscopy combined with machine learning to diagnose AD using blood plasma samples from 230 individuals (83 AD patients from 147 healthy controls). To evaluate the performance of the classification algorithms, we calculated the commonly used figures of merit (accuracy, sensitivity and specificity) and figures of merit that take into account the samples unbalance and the discrimination power of the models, as F(2)-score (F(2)), Matthews correlation coefficient (MCC) and test effectiveness ([Formula: see text] ). The classification models achieved satisfactory results: Parallel Factor Analysis with Quadratic Discriminant Analysis (PARAFAC-QDA) with 83.33% sensitivity, 100% specificity, 86.21% F(2); and Tucker3-QDA with 91.67% sensitivity, 95.45% specificity and 91.67% F(2). In addition, the classifiers show high overall performance with 94.12% accuracy and 0.87 MCC. Regarding the discrimination power between healthy and AD patients, the classification algorithms showed high effectiveness with the mean scores separated by three or more standard deviations. The PARAFAC's spectral profiles and the wavelength values from both models loading profiles can be used in future research to relate this information to plasma AD biomarkers. Our results point to a rapid, low-cost and minimally invasive blood-based method for AD diagnosis. Nature Publishing Group UK 2022-09-28 /pmc/articles/PMC9519548/ /pubmed/36171258 http://dx.doi.org/10.1038/s41598-022-20611-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article dos Santos, Ricardo Fernandes Paraskevaidi, Maria Mann, David M. A. Allsop, David Santos, Marfran C. D. Morais, Camilo L. M. Lima, Kássio M. G. Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title | Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title_full | Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title_fullStr | Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title_full_unstemmed | Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title_short | Alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (EEM) |
title_sort | alzheimer's disease diagnosis by blood plasma molecular fluorescence spectroscopy (eem) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9519548/ https://www.ncbi.nlm.nih.gov/pubmed/36171258 http://dx.doi.org/10.1038/s41598-022-20611-y |
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