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Generalism drives abundance: A computational causal discovery approach

A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives gener...

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Detalles Bibliográficos
Autores principales: Song, Chuliang, Simmons, Benno I., Fortin, Marie-Josée, Gonzalez, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521805/
https://www.ncbi.nlm.nih.gov/pubmed/36173959
http://dx.doi.org/10.1371/journal.pcbi.1010302
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author Song, Chuliang
Simmons, Benno I.
Fortin, Marie-Josée
Gonzalez, Andrew
author_facet Song, Chuliang
Simmons, Benno I.
Fortin, Marie-Josée
Gonzalez, Andrew
author_sort Song, Chuliang
collection PubMed
description A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research.
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spelling pubmed-95218052022-09-30 Generalism drives abundance: A computational causal discovery approach Song, Chuliang Simmons, Benno I. Fortin, Marie-Josée Gonzalez, Andrew PLoS Comput Biol Research Article A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research. Public Library of Science 2022-09-29 /pmc/articles/PMC9521805/ /pubmed/36173959 http://dx.doi.org/10.1371/journal.pcbi.1010302 Text en © 2022 Song et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Song, Chuliang
Simmons, Benno I.
Fortin, Marie-Josée
Gonzalez, Andrew
Generalism drives abundance: A computational causal discovery approach
title Generalism drives abundance: A computational causal discovery approach
title_full Generalism drives abundance: A computational causal discovery approach
title_fullStr Generalism drives abundance: A computational causal discovery approach
title_full_unstemmed Generalism drives abundance: A computational causal discovery approach
title_short Generalism drives abundance: A computational causal discovery approach
title_sort generalism drives abundance: a computational causal discovery approach
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521805/
https://www.ncbi.nlm.nih.gov/pubmed/36173959
http://dx.doi.org/10.1371/journal.pcbi.1010302
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