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Generalism drives abundance: A computational causal discovery approach
A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives gener...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521805/ https://www.ncbi.nlm.nih.gov/pubmed/36173959 http://dx.doi.org/10.1371/journal.pcbi.1010302 |
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author | Song, Chuliang Simmons, Benno I. Fortin, Marie-Josée Gonzalez, Andrew |
author_facet | Song, Chuliang Simmons, Benno I. Fortin, Marie-Josée Gonzalez, Andrew |
author_sort | Song, Chuliang |
collection | PubMed |
description | A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research. |
format | Online Article Text |
id | pubmed-9521805 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-95218052022-09-30 Generalism drives abundance: A computational causal discovery approach Song, Chuliang Simmons, Benno I. Fortin, Marie-Josée Gonzalez, Andrew PLoS Comput Biol Research Article A ubiquitous pattern in ecological systems is that more abundant species tend to be more generalist; that is, they interact with more species or can occur in wider range of habitats. However, there is no consensus on whether generalism drives abundance (a selection process) or abundance drives generalism (a drift process). As it is difficult to conduct direct experiments to solve this chicken-and-egg dilemma, previous studies have used a causal discovery method based on formal logic and have found that abundance drives generalism. Here, we refine this method by correcting its bias regarding skewed distributions, and employ two other independent causal discovery methods based on nonparametric regression and on information theory, respectively. Contrary to previous work, all three independent methods strongly indicate that generalism drives abundance when applied to datasets on plant-hummingbird communities and reef fishes. Furthermore, we find that selection processes are more important than drift processes in structuring multispecies systems when the environment is variable. Our results showcase the power of the computational causal discovery approach to aid ecological research. Public Library of Science 2022-09-29 /pmc/articles/PMC9521805/ /pubmed/36173959 http://dx.doi.org/10.1371/journal.pcbi.1010302 Text en © 2022 Song et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Song, Chuliang Simmons, Benno I. Fortin, Marie-Josée Gonzalez, Andrew Generalism drives abundance: A computational causal discovery approach |
title | Generalism drives abundance: A computational causal discovery approach |
title_full | Generalism drives abundance: A computational causal discovery approach |
title_fullStr | Generalism drives abundance: A computational causal discovery approach |
title_full_unstemmed | Generalism drives abundance: A computational causal discovery approach |
title_short | Generalism drives abundance: A computational causal discovery approach |
title_sort | generalism drives abundance: a computational causal discovery approach |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521805/ https://www.ncbi.nlm.nih.gov/pubmed/36173959 http://dx.doi.org/10.1371/journal.pcbi.1010302 |
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