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A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production

Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and s...

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Autores principales: Yong, Mohd Izzat, Mohamad, Mohd Saberi, Choon, Yee Wen, Chan, Weng Howe, Adli, Hasyiya Karimah, Syazwan WSW, Khairul Nizar, Yusoff, Nooraini, Remli, Muhammad Akmal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521821/
https://www.ncbi.nlm.nih.gov/pubmed/35852123
http://dx.doi.org/10.1515/jib-2022-0003
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author Yong, Mohd Izzat
Mohamad, Mohd Saberi
Choon, Yee Wen
Chan, Weng Howe
Adli, Hasyiya Karimah
Syazwan WSW, Khairul Nizar
Yusoff, Nooraini
Remli, Muhammad Akmal
author_facet Yong, Mohd Izzat
Mohamad, Mohd Saberi
Choon, Yee Wen
Chan, Weng Howe
Adli, Hasyiya Karimah
Syazwan WSW, Khairul Nizar
Yusoff, Nooraini
Remli, Muhammad Akmal
author_sort Yong, Mohd Izzat
collection PubMed
description Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and suggest changes in organisms. The crucial issue has been the unrealistic flux distribution presented in prior work on rational modelling framework adopting Optknock and OptGene. In order to address the problem, a hybrid of Bees Algorithm and Regulatory On/Off Minimization (BAROOM) is used. By employing Escherichia coli as the model organism, the most excellent set of genes in E. coli that can be removed and advance the production of succinate can be decided. Evidences shows that BAROOM outperforms alternative strategies used to escalate in succinate production in model organisms like E. coli by selecting the best set of genes to be removed.
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spelling pubmed-95218212022-10-26 A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production Yong, Mohd Izzat Mohamad, Mohd Saberi Choon, Yee Wen Chan, Weng Howe Adli, Hasyiya Karimah Syazwan WSW, Khairul Nizar Yusoff, Nooraini Remli, Muhammad Akmal J Integr Bioinform Workshop Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and suggest changes in organisms. The crucial issue has been the unrealistic flux distribution presented in prior work on rational modelling framework adopting Optknock and OptGene. In order to address the problem, a hybrid of Bees Algorithm and Regulatory On/Off Minimization (BAROOM) is used. By employing Escherichia coli as the model organism, the most excellent set of genes in E. coli that can be removed and advance the production of succinate can be decided. Evidences shows that BAROOM outperforms alternative strategies used to escalate in succinate production in model organisms like E. coli by selecting the best set of genes to be removed. De Gruyter 2022-07-19 /pmc/articles/PMC9521821/ /pubmed/35852123 http://dx.doi.org/10.1515/jib-2022-0003 Text en © 2022 the author(s), published by De Gruyter, Berlin/Boston https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Workshop
Yong, Mohd Izzat
Mohamad, Mohd Saberi
Choon, Yee Wen
Chan, Weng Howe
Adli, Hasyiya Karimah
Syazwan WSW, Khairul Nizar
Yusoff, Nooraini
Remli, Muhammad Akmal
A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title_full A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title_fullStr A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title_full_unstemmed A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title_short A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
title_sort hybrid of bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
topic Workshop
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521821/
https://www.ncbi.nlm.nih.gov/pubmed/35852123
http://dx.doi.org/10.1515/jib-2022-0003
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