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A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production
Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and s...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521821/ https://www.ncbi.nlm.nih.gov/pubmed/35852123 http://dx.doi.org/10.1515/jib-2022-0003 |
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author | Yong, Mohd Izzat Mohamad, Mohd Saberi Choon, Yee Wen Chan, Weng Howe Adli, Hasyiya Karimah Syazwan WSW, Khairul Nizar Yusoff, Nooraini Remli, Muhammad Akmal |
author_facet | Yong, Mohd Izzat Mohamad, Mohd Saberi Choon, Yee Wen Chan, Weng Howe Adli, Hasyiya Karimah Syazwan WSW, Khairul Nizar Yusoff, Nooraini Remli, Muhammad Akmal |
author_sort | Yong, Mohd Izzat |
collection | PubMed |
description | Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and suggest changes in organisms. The crucial issue has been the unrealistic flux distribution presented in prior work on rational modelling framework adopting Optknock and OptGene. In order to address the problem, a hybrid of Bees Algorithm and Regulatory On/Off Minimization (BAROOM) is used. By employing Escherichia coli as the model organism, the most excellent set of genes in E. coli that can be removed and advance the production of succinate can be decided. Evidences shows that BAROOM outperforms alternative strategies used to escalate in succinate production in model organisms like E. coli by selecting the best set of genes to be removed. |
format | Online Article Text |
id | pubmed-9521821 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-95218212022-10-26 A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production Yong, Mohd Izzat Mohamad, Mohd Saberi Choon, Yee Wen Chan, Weng Howe Adli, Hasyiya Karimah Syazwan WSW, Khairul Nizar Yusoff, Nooraini Remli, Muhammad Akmal J Integr Bioinform Workshop Metabolic engineering has expanded in importance and employment in recent years and is now extensively applied particularly in the production of biomass from microbes. Metabolic network models have been employed extravagantly in computational processes developed to enhance metabolic production and suggest changes in organisms. The crucial issue has been the unrealistic flux distribution presented in prior work on rational modelling framework adopting Optknock and OptGene. In order to address the problem, a hybrid of Bees Algorithm and Regulatory On/Off Minimization (BAROOM) is used. By employing Escherichia coli as the model organism, the most excellent set of genes in E. coli that can be removed and advance the production of succinate can be decided. Evidences shows that BAROOM outperforms alternative strategies used to escalate in succinate production in model organisms like E. coli by selecting the best set of genes to be removed. De Gruyter 2022-07-19 /pmc/articles/PMC9521821/ /pubmed/35852123 http://dx.doi.org/10.1515/jib-2022-0003 Text en © 2022 the author(s), published by De Gruyter, Berlin/Boston https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Workshop Yong, Mohd Izzat Mohamad, Mohd Saberi Choon, Yee Wen Chan, Weng Howe Adli, Hasyiya Karimah Syazwan WSW, Khairul Nizar Yusoff, Nooraini Remli, Muhammad Akmal A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title | A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title_full | A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title_fullStr | A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title_full_unstemmed | A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title_short | A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
title_sort | hybrid of bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production |
topic | Workshop |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9521821/ https://www.ncbi.nlm.nih.gov/pubmed/35852123 http://dx.doi.org/10.1515/jib-2022-0003 |
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