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Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes

Background: The effects of fatty acid metabolism in many tumors have been widely reported. Due to the diversity of lipid synthesis, uptake, and transformation in clear cell renal cell carcinoma (ccRCC) cells, many studies have shown that ccRCC is associated with fatty acid metabolism. The study aime...

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Autores principales: Nie, Shiwen, Huili, Youlong, Yao, Anliang, Liu, Jian, Wang, Yong, Wang, Lei, Zhang, Liguo, Kang, Shaosan, Cao, Fenghong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523225/
https://www.ncbi.nlm.nih.gov/pubmed/36186450
http://dx.doi.org/10.3389/fgene.2022.1013178
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author Nie, Shiwen
Huili, Youlong
Yao, Anliang
Liu, Jian
Wang, Yong
Wang, Lei
Zhang, Liguo
Kang, Shaosan
Cao, Fenghong
author_facet Nie, Shiwen
Huili, Youlong
Yao, Anliang
Liu, Jian
Wang, Yong
Wang, Lei
Zhang, Liguo
Kang, Shaosan
Cao, Fenghong
author_sort Nie, Shiwen
collection PubMed
description Background: The effects of fatty acid metabolism in many tumors have been widely reported. Due to the diversity of lipid synthesis, uptake, and transformation in clear cell renal cell carcinoma (ccRCC) cells, many studies have shown that ccRCC is associated with fatty acid metabolism. The study aimed was to explore the impact of fatty acid metabolism genes on the prognosis and immunotherapy of ccRCC. Methods: Two subtypes were distinguished by unsupervised clustering analysis based on the expression of 309 fatty acid metabolism genes. A prognostic model was constructed by lasso algorithm and multivariate COX regression analysis using fatty acid metabolism genes as the signatures. The tumor microenvironment between subtypes and between risk groups was further analyzed. The International Cancer Genome Consortium cohort was used for external validation of the model. Results: The analysis showed that subtype B had a poorer prognosis and a higher degree of immune infiltration. The high-risk group had a poorer prognosis and higher tumor microenvironment scores. The nomogram could accurately predict patient survival. Conclusion: Fatty acid metabolism may affect the prognosis and immune infiltration of patients with ccRCC. The analysis was performed to understand the potential role of fatty acid metabolism genes in the immune infiltration and prognosis of patients. These findings have implications for individualized treatment, prognosis, and immunization for patients with ccRCC.
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spelling pubmed-95232252022-10-01 Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes Nie, Shiwen Huili, Youlong Yao, Anliang Liu, Jian Wang, Yong Wang, Lei Zhang, Liguo Kang, Shaosan Cao, Fenghong Front Genet Genetics Background: The effects of fatty acid metabolism in many tumors have been widely reported. Due to the diversity of lipid synthesis, uptake, and transformation in clear cell renal cell carcinoma (ccRCC) cells, many studies have shown that ccRCC is associated with fatty acid metabolism. The study aimed was to explore the impact of fatty acid metabolism genes on the prognosis and immunotherapy of ccRCC. Methods: Two subtypes were distinguished by unsupervised clustering analysis based on the expression of 309 fatty acid metabolism genes. A prognostic model was constructed by lasso algorithm and multivariate COX regression analysis using fatty acid metabolism genes as the signatures. The tumor microenvironment between subtypes and between risk groups was further analyzed. The International Cancer Genome Consortium cohort was used for external validation of the model. Results: The analysis showed that subtype B had a poorer prognosis and a higher degree of immune infiltration. The high-risk group had a poorer prognosis and higher tumor microenvironment scores. The nomogram could accurately predict patient survival. Conclusion: Fatty acid metabolism may affect the prognosis and immune infiltration of patients with ccRCC. The analysis was performed to understand the potential role of fatty acid metabolism genes in the immune infiltration and prognosis of patients. These findings have implications for individualized treatment, prognosis, and immunization for patients with ccRCC. Frontiers Media S.A. 2022-09-16 /pmc/articles/PMC9523225/ /pubmed/36186450 http://dx.doi.org/10.3389/fgene.2022.1013178 Text en Copyright © 2022 Nie, Huili, Yao, Liu, Wang, Wang, Zhang, Kang and Cao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Nie, Shiwen
Huili, Youlong
Yao, Anliang
Liu, Jian
Wang, Yong
Wang, Lei
Zhang, Liguo
Kang, Shaosan
Cao, Fenghong
Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title_full Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title_fullStr Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title_full_unstemmed Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title_short Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
title_sort identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523225/
https://www.ncbi.nlm.nih.gov/pubmed/36186450
http://dx.doi.org/10.3389/fgene.2022.1013178
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