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Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer
BACKGROUND: Local recurrence and distant metastasis are the main causes of death in patients with lung cancer. Multiple studies have described the recurrence or metastasis of lung cancer at the genetic level. However, association between the microbiome of lung cancer tissue and recurrence or metasta...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523266/ https://www.ncbi.nlm.nih.gov/pubmed/36187983 http://dx.doi.org/10.3389/fmicb.2022.1007831 |
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author | Yuan, Xuelian Wang, Zhina Li, Changjun Lv, Kebo Tian, Geng Tang, Min Ji, Lei Yang, Jialiang |
author_facet | Yuan, Xuelian Wang, Zhina Li, Changjun Lv, Kebo Tian, Geng Tang, Min Ji, Lei Yang, Jialiang |
author_sort | Yuan, Xuelian |
collection | PubMed |
description | BACKGROUND: Local recurrence and distant metastasis are the main causes of death in patients with lung cancer. Multiple studies have described the recurrence or metastasis of lung cancer at the genetic level. However, association between the microbiome of lung cancer tissue and recurrence or metastasis remains to be discovered. Here, we aimed to identify the bacterial biomarkers capable of distinguishing patients with lung cancer from recurrence or metastasis, and how it related to the severity of patients with lung cancer. METHODS: We applied microbiome pipeline to bacterial communities of 134 non-recurrence and non-metastasis (non-RM) and 174 recurrence or metastasis (RM) samples downloaded from The Cancer Genome Atlas (TCGA). Co-occurrence network was built to explore the bacterial interactions in lung cancer tissue of RM and non-RM. Finally, the Kaplan–Meier survival analysis was used to evaluate the association between bacterial biomarkers and patient survival. RESULTS: Compared with non-RM, the bacterial community of RM had lower richness and higher Bray–Curtis dissimilarity index. Interestingly, the co-occurrence network of non-RM was more complex than RM. The top 500 genera in relative abundance obtained an area under the curve (AUC) of 0.72 when discriminating between RM and non-RM. There were significant differences in the relative abundances of Acidovorax, Clostridioides, Succinimonas, and Shewanella, and so on between RM and non-RM. These biomarkers played a role in predicting the survival of lung cancer patients and were significantly associated with lung cancer stage. CONCLUSION: This study provides the first evidence for the prediction of lung cancer recurrence or metastasis by bacteria in lung cancer tissue. Our results highlights that bacterial biomarkers that distinguish RM and non-RM are also associated with patient survival and disease severity. |
format | Online Article Text |
id | pubmed-9523266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95232662022-10-01 Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer Yuan, Xuelian Wang, Zhina Li, Changjun Lv, Kebo Tian, Geng Tang, Min Ji, Lei Yang, Jialiang Front Microbiol Microbiology BACKGROUND: Local recurrence and distant metastasis are the main causes of death in patients with lung cancer. Multiple studies have described the recurrence or metastasis of lung cancer at the genetic level. However, association between the microbiome of lung cancer tissue and recurrence or metastasis remains to be discovered. Here, we aimed to identify the bacterial biomarkers capable of distinguishing patients with lung cancer from recurrence or metastasis, and how it related to the severity of patients with lung cancer. METHODS: We applied microbiome pipeline to bacterial communities of 134 non-recurrence and non-metastasis (non-RM) and 174 recurrence or metastasis (RM) samples downloaded from The Cancer Genome Atlas (TCGA). Co-occurrence network was built to explore the bacterial interactions in lung cancer tissue of RM and non-RM. Finally, the Kaplan–Meier survival analysis was used to evaluate the association between bacterial biomarkers and patient survival. RESULTS: Compared with non-RM, the bacterial community of RM had lower richness and higher Bray–Curtis dissimilarity index. Interestingly, the co-occurrence network of non-RM was more complex than RM. The top 500 genera in relative abundance obtained an area under the curve (AUC) of 0.72 when discriminating between RM and non-RM. There were significant differences in the relative abundances of Acidovorax, Clostridioides, Succinimonas, and Shewanella, and so on between RM and non-RM. These biomarkers played a role in predicting the survival of lung cancer patients and were significantly associated with lung cancer stage. CONCLUSION: This study provides the first evidence for the prediction of lung cancer recurrence or metastasis by bacteria in lung cancer tissue. Our results highlights that bacterial biomarkers that distinguish RM and non-RM are also associated with patient survival and disease severity. Frontiers Media S.A. 2022-09-16 /pmc/articles/PMC9523266/ /pubmed/36187983 http://dx.doi.org/10.3389/fmicb.2022.1007831 Text en Copyright © 2022 Yuan, Wang, Li, Lv, Tian, Tang, Ji and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Yuan, Xuelian Wang, Zhina Li, Changjun Lv, Kebo Tian, Geng Tang, Min Ji, Lei Yang, Jialiang Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title | Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title_full | Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title_fullStr | Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title_full_unstemmed | Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title_short | Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
title_sort | bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523266/ https://www.ncbi.nlm.nih.gov/pubmed/36187983 http://dx.doi.org/10.3389/fmicb.2022.1007831 |
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