Cargando…
CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR def...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523515/ https://www.ncbi.nlm.nih.gov/pubmed/36185292 http://dx.doi.org/10.3389/fonc.2022.883109 |
_version_ | 1784800304532815872 |
---|---|
author | Zeng, Qingwen Zhu, Yanyan Li, Leyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong |
author_facet | Zeng, Qingwen Zhu, Yanyan Li, Leyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong |
author_sort | Zeng, Qingwen |
collection | PubMed |
description | BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR deficiency in gastric cancer (GC). METHODS: In this retrospective analysis, 225 and 91 GC patients from two distinct hospital cohorts were included. Cohort 1 was randomly divided into a training cohort (n = 176) and an internal validation cohort (n = 76), whereas cohort 2 was considered an external validation cohort. Based on repeatable radiomic features, a radiomic signature was constructed using the least absolute shrinkage and selection operator (LASSO) regression analysis. We employed multivariable logistic regression analysis to build a radiomics-based model based on radiomic features and preoperative clinical characteristics. Furthermore, this prediction model was presented as a radiomic nomogram, which was evaluated in the training, internal validation, and external validation cohorts. RESULTS: The radiomic signature composed of 15 robust features showed a significant association with MMR protein status in the training, internal validation, and external validation cohorts (both P-values <0.001). A radiomic nomogram incorporating a radiomic signature and two clinical characteristics (age and CT-reported N stage) represented good discrimination in the training cohort with an AUC of 0.902 (95% CI: 0.853–0.951), in the internal validation cohort with an AUC of 0.972 (95% CI: 0.945–1.000) and in the external validation cohort with an AUC of 0.891 (95% CI: 0.825–0.958). CONCLUSION: The CT-based radiomic nomogram showed good performance for preoperative prediction of MMR protein status in GC. Furthermore, this model was a noninvasive tool to predict MMR protein status and guide neoadjuvant therapy. |
format | Online Article Text |
id | pubmed-9523515 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95235152022-10-01 CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer Zeng, Qingwen Zhu, Yanyan Li, Leyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong Front Oncol Oncology BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR deficiency in gastric cancer (GC). METHODS: In this retrospective analysis, 225 and 91 GC patients from two distinct hospital cohorts were included. Cohort 1 was randomly divided into a training cohort (n = 176) and an internal validation cohort (n = 76), whereas cohort 2 was considered an external validation cohort. Based on repeatable radiomic features, a radiomic signature was constructed using the least absolute shrinkage and selection operator (LASSO) regression analysis. We employed multivariable logistic regression analysis to build a radiomics-based model based on radiomic features and preoperative clinical characteristics. Furthermore, this prediction model was presented as a radiomic nomogram, which was evaluated in the training, internal validation, and external validation cohorts. RESULTS: The radiomic signature composed of 15 robust features showed a significant association with MMR protein status in the training, internal validation, and external validation cohorts (both P-values <0.001). A radiomic nomogram incorporating a radiomic signature and two clinical characteristics (age and CT-reported N stage) represented good discrimination in the training cohort with an AUC of 0.902 (95% CI: 0.853–0.951), in the internal validation cohort with an AUC of 0.972 (95% CI: 0.945–1.000) and in the external validation cohort with an AUC of 0.891 (95% CI: 0.825–0.958). CONCLUSION: The CT-based radiomic nomogram showed good performance for preoperative prediction of MMR protein status in GC. Furthermore, this model was a noninvasive tool to predict MMR protein status and guide neoadjuvant therapy. Frontiers Media S.A. 2022-09-16 /pmc/articles/PMC9523515/ /pubmed/36185292 http://dx.doi.org/10.3389/fonc.2022.883109 Text en Copyright © 2022 Zeng, Zhu, Li, Feng, Shu, Wu, Luo, Cao, Tu, Xiong, Zhou and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zeng, Qingwen Zhu, Yanyan Li, Leyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title | CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title_full | CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title_fullStr | CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title_full_unstemmed | CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title_short | CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer |
title_sort | ct-based radiomic nomogram for preoperative prediction of dna mismatch repair deficiency in gastric cancer |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523515/ https://www.ncbi.nlm.nih.gov/pubmed/36185292 http://dx.doi.org/10.3389/fonc.2022.883109 |
work_keys_str_mv | AT zengqingwen ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT zhuyanyan ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT lileyan ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT fengzongfeng ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT shuxufeng ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT wuahao ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT luolianghua ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT caoyi ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT tuyi ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT xiongjianbo ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT zhoufuqing ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer AT lizhengrong ctbasedradiomicnomogramforpreoperativepredictionofdnamismatchrepairdeficiencyingastriccancer |