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CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer

BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR def...

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Autores principales: Zeng, Qingwen, Zhu, Yanyan, Li, Leyan, Feng, Zongfeng, Shu, Xufeng, Wu, Ahao, Luo, Lianghua, Cao, Yi, Tu, Yi, Xiong, Jianbo, Zhou, Fuqing, Li, Zhengrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523515/
https://www.ncbi.nlm.nih.gov/pubmed/36185292
http://dx.doi.org/10.3389/fonc.2022.883109
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author Zeng, Qingwen
Zhu, Yanyan
Li, Leyan
Feng, Zongfeng
Shu, Xufeng
Wu, Ahao
Luo, Lianghua
Cao, Yi
Tu, Yi
Xiong, Jianbo
Zhou, Fuqing
Li, Zhengrong
author_facet Zeng, Qingwen
Zhu, Yanyan
Li, Leyan
Feng, Zongfeng
Shu, Xufeng
Wu, Ahao
Luo, Lianghua
Cao, Yi
Tu, Yi
Xiong, Jianbo
Zhou, Fuqing
Li, Zhengrong
author_sort Zeng, Qingwen
collection PubMed
description BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR deficiency in gastric cancer (GC). METHODS: In this retrospective analysis, 225 and 91 GC patients from two distinct hospital cohorts were included. Cohort 1 was randomly divided into a training cohort (n = 176) and an internal validation cohort (n = 76), whereas cohort 2 was considered an external validation cohort. Based on repeatable radiomic features, a radiomic signature was constructed using the least absolute shrinkage and selection operator (LASSO) regression analysis. We employed multivariable logistic regression analysis to build a radiomics-based model based on radiomic features and preoperative clinical characteristics. Furthermore, this prediction model was presented as a radiomic nomogram, which was evaluated in the training, internal validation, and external validation cohorts. RESULTS: The radiomic signature composed of 15 robust features showed a significant association with MMR protein status in the training, internal validation, and external validation cohorts (both P-values <0.001). A radiomic nomogram incorporating a radiomic signature and two clinical characteristics (age and CT-reported N stage) represented good discrimination in the training cohort with an AUC of 0.902 (95% CI: 0.853–0.951), in the internal validation cohort with an AUC of 0.972 (95% CI: 0.945–1.000) and in the external validation cohort with an AUC of 0.891 (95% CI: 0.825–0.958). CONCLUSION: The CT-based radiomic nomogram showed good performance for preoperative prediction of MMR protein status in GC. Furthermore, this model was a noninvasive tool to predict MMR protein status and guide neoadjuvant therapy.
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spelling pubmed-95235152022-10-01 CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer Zeng, Qingwen Zhu, Yanyan Li, Leyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong Front Oncol Oncology BACKGROUND: DNA mismatch repair (MMR) deficiency has attracted considerable attention as a predictor of the immunotherapy efficacy of solid tumors, including gastric cancer. We aimed to develop and validate a computed tomography (CT)-based radiomic nomogram for the preoperative prediction of MMR deficiency in gastric cancer (GC). METHODS: In this retrospective analysis, 225 and 91 GC patients from two distinct hospital cohorts were included. Cohort 1 was randomly divided into a training cohort (n = 176) and an internal validation cohort (n = 76), whereas cohort 2 was considered an external validation cohort. Based on repeatable radiomic features, a radiomic signature was constructed using the least absolute shrinkage and selection operator (LASSO) regression analysis. We employed multivariable logistic regression analysis to build a radiomics-based model based on radiomic features and preoperative clinical characteristics. Furthermore, this prediction model was presented as a radiomic nomogram, which was evaluated in the training, internal validation, and external validation cohorts. RESULTS: The radiomic signature composed of 15 robust features showed a significant association with MMR protein status in the training, internal validation, and external validation cohorts (both P-values <0.001). A radiomic nomogram incorporating a radiomic signature and two clinical characteristics (age and CT-reported N stage) represented good discrimination in the training cohort with an AUC of 0.902 (95% CI: 0.853–0.951), in the internal validation cohort with an AUC of 0.972 (95% CI: 0.945–1.000) and in the external validation cohort with an AUC of 0.891 (95% CI: 0.825–0.958). CONCLUSION: The CT-based radiomic nomogram showed good performance for preoperative prediction of MMR protein status in GC. Furthermore, this model was a noninvasive tool to predict MMR protein status and guide neoadjuvant therapy. Frontiers Media S.A. 2022-09-16 /pmc/articles/PMC9523515/ /pubmed/36185292 http://dx.doi.org/10.3389/fonc.2022.883109 Text en Copyright © 2022 Zeng, Zhu, Li, Feng, Shu, Wu, Luo, Cao, Tu, Xiong, Zhou and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zeng, Qingwen
Zhu, Yanyan
Li, Leyan
Feng, Zongfeng
Shu, Xufeng
Wu, Ahao
Luo, Lianghua
Cao, Yi
Tu, Yi
Xiong, Jianbo
Zhou, Fuqing
Li, Zhengrong
CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title_full CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title_fullStr CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title_full_unstemmed CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title_short CT-based radiomic nomogram for preoperative prediction of DNA mismatch repair deficiency in gastric cancer
title_sort ct-based radiomic nomogram for preoperative prediction of dna mismatch repair deficiency in gastric cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523515/
https://www.ncbi.nlm.nih.gov/pubmed/36185292
http://dx.doi.org/10.3389/fonc.2022.883109
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