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Dynamic feature learning for COVID-19 segmentation and classification

Since December 2019, coronavirus SARS-CoV-2 (COVID-19) has rapidly developed into a global epidemic, with millions of patients affected worldwide. As part of the diagnostic pathway, computed tomography (CT) scans are used to help patient management. However, parenchymal imaging findings in COVID-19...

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Autores principales: Zhang, Xiaoqin, Jiang, Runhua, Huang, Pengcheng, Wang, Tao, Hu, Mingjun, Scarsbrook, Andrew F., Frangi, Alejandro F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523910/
https://www.ncbi.nlm.nih.gov/pubmed/36240599
http://dx.doi.org/10.1016/j.compbiomed.2022.106136
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author Zhang, Xiaoqin
Jiang, Runhua
Huang, Pengcheng
Wang, Tao
Hu, Mingjun
Scarsbrook, Andrew F.
Frangi, Alejandro F.
author_facet Zhang, Xiaoqin
Jiang, Runhua
Huang, Pengcheng
Wang, Tao
Hu, Mingjun
Scarsbrook, Andrew F.
Frangi, Alejandro F.
author_sort Zhang, Xiaoqin
collection PubMed
description Since December 2019, coronavirus SARS-CoV-2 (COVID-19) has rapidly developed into a global epidemic, with millions of patients affected worldwide. As part of the diagnostic pathway, computed tomography (CT) scans are used to help patient management. However, parenchymal imaging findings in COVID-19 are non-specific and can be seen in other diseases. In this work, we propose to first segment lesions from CT images, and further, classify COVID-19 patients from healthy persons and common pneumonia patients. In detail, a novel Dynamic Fusion Segmentation Network (DFSN) that automatically segments infection-related pixels is first proposed. Within this network, low-level features are aggregated to high-level ones to effectively capture context characteristics of infection regions, and high-level features are dynamically fused to model multi-scale semantic information of lesions. Based on DFSN, Dynamic Transfer-learning Classification Network (DTCN) is proposed to distinguish COVID-19 patients. Within DTCN, a pre-trained DFSN is transferred and used as the backbone to extract pixel-level information. Then the pixel-level information is dynamically selected and used to make a diagnosis. In this way, the pre-trained DFSN is utilized through transfer learning, and clinical significance of segmentation results is comprehensively considered. Thus DTCN becomes more sensitive to typical signs of COVID-19. Extensive experiments are conducted to demonstrate effectiveness of the proposed DFSN and DTCN frameworks. The corresponding results indicate that these two models achieve state-of-the-art performance in terms of segmentation and classification.
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spelling pubmed-95239102022-09-30 Dynamic feature learning for COVID-19 segmentation and classification Zhang, Xiaoqin Jiang, Runhua Huang, Pengcheng Wang, Tao Hu, Mingjun Scarsbrook, Andrew F. Frangi, Alejandro F. Comput Biol Med Article Since December 2019, coronavirus SARS-CoV-2 (COVID-19) has rapidly developed into a global epidemic, with millions of patients affected worldwide. As part of the diagnostic pathway, computed tomography (CT) scans are used to help patient management. However, parenchymal imaging findings in COVID-19 are non-specific and can be seen in other diseases. In this work, we propose to first segment lesions from CT images, and further, classify COVID-19 patients from healthy persons and common pneumonia patients. In detail, a novel Dynamic Fusion Segmentation Network (DFSN) that automatically segments infection-related pixels is first proposed. Within this network, low-level features are aggregated to high-level ones to effectively capture context characteristics of infection regions, and high-level features are dynamically fused to model multi-scale semantic information of lesions. Based on DFSN, Dynamic Transfer-learning Classification Network (DTCN) is proposed to distinguish COVID-19 patients. Within DTCN, a pre-trained DFSN is transferred and used as the backbone to extract pixel-level information. Then the pixel-level information is dynamically selected and used to make a diagnosis. In this way, the pre-trained DFSN is utilized through transfer learning, and clinical significance of segmentation results is comprehensively considered. Thus DTCN becomes more sensitive to typical signs of COVID-19. Extensive experiments are conducted to demonstrate effectiveness of the proposed DFSN and DTCN frameworks. The corresponding results indicate that these two models achieve state-of-the-art performance in terms of segmentation and classification. Elsevier Ltd. 2022-11 2022-09-30 /pmc/articles/PMC9523910/ /pubmed/36240599 http://dx.doi.org/10.1016/j.compbiomed.2022.106136 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Zhang, Xiaoqin
Jiang, Runhua
Huang, Pengcheng
Wang, Tao
Hu, Mingjun
Scarsbrook, Andrew F.
Frangi, Alejandro F.
Dynamic feature learning for COVID-19 segmentation and classification
title Dynamic feature learning for COVID-19 segmentation and classification
title_full Dynamic feature learning for COVID-19 segmentation and classification
title_fullStr Dynamic feature learning for COVID-19 segmentation and classification
title_full_unstemmed Dynamic feature learning for COVID-19 segmentation and classification
title_short Dynamic feature learning for COVID-19 segmentation and classification
title_sort dynamic feature learning for covid-19 segmentation and classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9523910/
https://www.ncbi.nlm.nih.gov/pubmed/36240599
http://dx.doi.org/10.1016/j.compbiomed.2022.106136
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