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Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration

BACKGROUND: Intervertebral disc degeneration (IDD) has become a serious public health problem, the mechanism of which is complex and still unclear. We aimed to construct a ceRNA network related to IDD to explore its pathogenesis. METHODS: We downloaded the GSE67566, GSE63492, GSE116726 and GSE124272...

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Autores principales: Fang, Xiaoyang, Tang, Tian, Sun, Daoxi, Chen, Shuang, Wang, Nan, Xie, Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9524080/
https://www.ncbi.nlm.nih.gov/pubmed/36175893
http://dx.doi.org/10.1186/s13018-022-03331-x
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author Fang, Xiaoyang
Tang, Tian
Sun, Daoxi
Chen, Shuang
Wang, Nan
Xie, Lin
author_facet Fang, Xiaoyang
Tang, Tian
Sun, Daoxi
Chen, Shuang
Wang, Nan
Xie, Lin
author_sort Fang, Xiaoyang
collection PubMed
description BACKGROUND: Intervertebral disc degeneration (IDD) has become a serious public health problem, the mechanism of which is complex and still unclear. We aimed to construct a ceRNA network related to IDD to explore its pathogenesis. METHODS: We downloaded the GSE67566, GSE63492, GSE116726 and GSE124272 datasets from GEO database, and obtained the differentially expressed RNAs. Then, we constructed a ceRNA network and the KEGG and GO enrichment analysis were performed. Finally, we performed immune cell infiltration analysis on the GSE124272 dataset and analysed the correlation between immune cell abundance and hub genes expression levels. RESULTS: The ceRNA network included three down-regulated circRNAs: hsa_circ_0074817, hsa_circ_0002702, hsa_circ_0003600, three up-regulated miRNAs: hsa-miR-4741, hsa-miR-3158-5p, hsa-miR-508-5p, and 57 down-regulated mRNAs, including six hub genes: IGF1, CHEK1, CCNB1, OIP5, BIRC5, AR. GO and KEGG analysis revealed that the network is involved in various biological functions. Immune infiltration analysis showed that IDD was closely related to immune cell infiltration, and hub genes could further affect the development of IDD by affecting immune cell infiltration. CONCLUSION: This study identified the hsa_circ_0074817-hsa-miR-508-5p-IGF1/CHEK1/CCNB1, the hsa_circ_0003600-hsa-miR-4741-BIRC5/OIP5/AR and the hsa_circ_0002702-hsa-miR-3158-5p-IGF1/AR as important regulatory axis of IDD, which will help us gain further insight into the pathogenesis of IDD and determine potential therapeutic targets.
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spelling pubmed-95240802022-10-01 Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration Fang, Xiaoyang Tang, Tian Sun, Daoxi Chen, Shuang Wang, Nan Xie, Lin J Orthop Surg Res Research Article BACKGROUND: Intervertebral disc degeneration (IDD) has become a serious public health problem, the mechanism of which is complex and still unclear. We aimed to construct a ceRNA network related to IDD to explore its pathogenesis. METHODS: We downloaded the GSE67566, GSE63492, GSE116726 and GSE124272 datasets from GEO database, and obtained the differentially expressed RNAs. Then, we constructed a ceRNA network and the KEGG and GO enrichment analysis were performed. Finally, we performed immune cell infiltration analysis on the GSE124272 dataset and analysed the correlation between immune cell abundance and hub genes expression levels. RESULTS: The ceRNA network included three down-regulated circRNAs: hsa_circ_0074817, hsa_circ_0002702, hsa_circ_0003600, three up-regulated miRNAs: hsa-miR-4741, hsa-miR-3158-5p, hsa-miR-508-5p, and 57 down-regulated mRNAs, including six hub genes: IGF1, CHEK1, CCNB1, OIP5, BIRC5, AR. GO and KEGG analysis revealed that the network is involved in various biological functions. Immune infiltration analysis showed that IDD was closely related to immune cell infiltration, and hub genes could further affect the development of IDD by affecting immune cell infiltration. CONCLUSION: This study identified the hsa_circ_0074817-hsa-miR-508-5p-IGF1/CHEK1/CCNB1, the hsa_circ_0003600-hsa-miR-4741-BIRC5/OIP5/AR and the hsa_circ_0002702-hsa-miR-3158-5p-IGF1/AR as important regulatory axis of IDD, which will help us gain further insight into the pathogenesis of IDD and determine potential therapeutic targets. BioMed Central 2022-09-29 /pmc/articles/PMC9524080/ /pubmed/36175893 http://dx.doi.org/10.1186/s13018-022-03331-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Fang, Xiaoyang
Tang, Tian
Sun, Daoxi
Chen, Shuang
Wang, Nan
Xie, Lin
Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title_full Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title_fullStr Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title_full_unstemmed Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title_short Comprehensive analysis of potential ceRNA network and immune cell infiltration in intervertebral disc degeneration
title_sort comprehensive analysis of potential cerna network and immune cell infiltration in intervertebral disc degeneration
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9524080/
https://www.ncbi.nlm.nih.gov/pubmed/36175893
http://dx.doi.org/10.1186/s13018-022-03331-x
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