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A standardized nomenclature for mammalian histone genes
Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resulted in agreement amongst experts on a revised systematic protein nomenclature for histones,...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526256/ https://www.ncbi.nlm.nih.gov/pubmed/36180920 http://dx.doi.org/10.1186/s13072-022-00467-2 |
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author | Seal, Ruth L. Denny, Paul Bruford, Elspeth A. Gribkova, Anna K. Landsman, David Marzluff, William F. McAndrews, Monica Panchenko, Anna R. Shaytan, Alexey K. Talbert, Paul B. |
author_facet | Seal, Ruth L. Denny, Paul Bruford, Elspeth A. Gribkova, Anna K. Landsman, David Marzluff, William F. McAndrews, Monica Panchenko, Anna R. Shaytan, Alexey K. Talbert, Paul B. |
author_sort | Seal, Ruth L. |
collection | PubMed |
description | Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resulted in agreement amongst experts on a revised systematic protein nomenclature for histones, which is based on a combination of phylogenetic classification and historical symbol usage. Human and mouse histone gene symbols previously followed a genome-centric system that was not applicable across all vertebrate species and did not reflect the systematic histone protein nomenclature. This prompted a collaboration between histone experts, the Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC) and Mouse Genomic Nomenclature Committee (MGNC) to revise human and mouse histone gene nomenclature aiming, where possible, to follow the new protein nomenclature whilst conforming to the guidelines for vertebrate gene naming. The updated nomenclature has also been applied to orthologous histone genes in chimpanzee, rhesus macaque, dog, cat, pig, horse and cattle, and can serve as a framework for naming other vertebrate histone genes in the future. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13072-022-00467-2. |
format | Online Article Text |
id | pubmed-9526256 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-95262562022-10-02 A standardized nomenclature for mammalian histone genes Seal, Ruth L. Denny, Paul Bruford, Elspeth A. Gribkova, Anna K. Landsman, David Marzluff, William F. McAndrews, Monica Panchenko, Anna R. Shaytan, Alexey K. Talbert, Paul B. Epigenetics Chromatin Review Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resulted in agreement amongst experts on a revised systematic protein nomenclature for histones, which is based on a combination of phylogenetic classification and historical symbol usage. Human and mouse histone gene symbols previously followed a genome-centric system that was not applicable across all vertebrate species and did not reflect the systematic histone protein nomenclature. This prompted a collaboration between histone experts, the Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC) and Mouse Genomic Nomenclature Committee (MGNC) to revise human and mouse histone gene nomenclature aiming, where possible, to follow the new protein nomenclature whilst conforming to the guidelines for vertebrate gene naming. The updated nomenclature has also been applied to orthologous histone genes in chimpanzee, rhesus macaque, dog, cat, pig, horse and cattle, and can serve as a framework for naming other vertebrate histone genes in the future. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13072-022-00467-2. BioMed Central 2022-10-01 /pmc/articles/PMC9526256/ /pubmed/36180920 http://dx.doi.org/10.1186/s13072-022-00467-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Review Seal, Ruth L. Denny, Paul Bruford, Elspeth A. Gribkova, Anna K. Landsman, David Marzluff, William F. McAndrews, Monica Panchenko, Anna R. Shaytan, Alexey K. Talbert, Paul B. A standardized nomenclature for mammalian histone genes |
title | A standardized nomenclature for mammalian histone genes |
title_full | A standardized nomenclature for mammalian histone genes |
title_fullStr | A standardized nomenclature for mammalian histone genes |
title_full_unstemmed | A standardized nomenclature for mammalian histone genes |
title_short | A standardized nomenclature for mammalian histone genes |
title_sort | standardized nomenclature for mammalian histone genes |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526256/ https://www.ncbi.nlm.nih.gov/pubmed/36180920 http://dx.doi.org/10.1186/s13072-022-00467-2 |
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