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Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans

PURPOSE: To develop an automated method based on deep learning (DL) to classify macular edema (ME) from the evaluation of optical coherence tomography (OCT) scans. METHODS: A total of 4230 images were obtained from data repositories of patients attended in an ophthalmology clinic in Colombia and two...

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Autores principales: Padilla-Pantoja, Fabio Daniel, Sanchez, Yeison D., Quijano-Nieto, Bernardo Alfonso, Perdomo, Oscar J., Gonzalez, Fabio A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526369/
https://www.ncbi.nlm.nih.gov/pubmed/36169966
http://dx.doi.org/10.1167/tvst.11.9.29
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author Padilla-Pantoja, Fabio Daniel
Sanchez, Yeison D.
Quijano-Nieto, Bernardo Alfonso
Perdomo, Oscar J.
Gonzalez, Fabio A.
author_facet Padilla-Pantoja, Fabio Daniel
Sanchez, Yeison D.
Quijano-Nieto, Bernardo Alfonso
Perdomo, Oscar J.
Gonzalez, Fabio A.
author_sort Padilla-Pantoja, Fabio Daniel
collection PubMed
description PURPOSE: To develop an automated method based on deep learning (DL) to classify macular edema (ME) from the evaluation of optical coherence tomography (OCT) scans. METHODS: A total of 4230 images were obtained from data repositories of patients attended in an ophthalmology clinic in Colombia and two free open-access databases. They were annotated with four biomarkers (BMs) as intraretinal fluid, subretinal fluid, hyperreflective foci/tissue, and drusen. Then the scans were labeled as control or ocular disease among diabetic macular edema (DME), neovascular age-related macular degeneration (nAMD), and retinal vein occlusion (RVO) by two expert ophthalmologists. Our method was developed by following four consecutive phases: segmentation of BMs, the combination of BMs, feature extraction with convolutional neural networks to achieve binary classification for each disease, and, finally, multiclass classification of diseases and control images. RESULTS: The accuracy of our model for nAMD was 97%, and for DME, RVO, and control were 94%, 93%, and 93%, respectively. Area under curve values were 0.99, 0.98, 0.96, and 0.97, respectively. The mean Cohen's kappa coefficient for the multiclass classification task was 0.84. CONCLUSIONS: The proposed DL model may identify OCT scans as normal and ME. In addition, it may classify its cause among three major exudative retinal diseases with high accuracy and reliability. TRANSLATIONAL RELEVANCE: Our DL approach can optimize the efficiency and timeliness of appropriate etiological diagnosis of ME, thus improving patient access and clinical decision making. It could be useful in places with a shortage of specialists and for readers that evaluate OCT scans remotely.
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spelling pubmed-95263692022-10-02 Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans Padilla-Pantoja, Fabio Daniel Sanchez, Yeison D. Quijano-Nieto, Bernardo Alfonso Perdomo, Oscar J. Gonzalez, Fabio A. Transl Vis Sci Technol Artificial Intelligence PURPOSE: To develop an automated method based on deep learning (DL) to classify macular edema (ME) from the evaluation of optical coherence tomography (OCT) scans. METHODS: A total of 4230 images were obtained from data repositories of patients attended in an ophthalmology clinic in Colombia and two free open-access databases. They were annotated with four biomarkers (BMs) as intraretinal fluid, subretinal fluid, hyperreflective foci/tissue, and drusen. Then the scans were labeled as control or ocular disease among diabetic macular edema (DME), neovascular age-related macular degeneration (nAMD), and retinal vein occlusion (RVO) by two expert ophthalmologists. Our method was developed by following four consecutive phases: segmentation of BMs, the combination of BMs, feature extraction with convolutional neural networks to achieve binary classification for each disease, and, finally, multiclass classification of diseases and control images. RESULTS: The accuracy of our model for nAMD was 97%, and for DME, RVO, and control were 94%, 93%, and 93%, respectively. Area under curve values were 0.99, 0.98, 0.96, and 0.97, respectively. The mean Cohen's kappa coefficient for the multiclass classification task was 0.84. CONCLUSIONS: The proposed DL model may identify OCT scans as normal and ME. In addition, it may classify its cause among three major exudative retinal diseases with high accuracy and reliability. TRANSLATIONAL RELEVANCE: Our DL approach can optimize the efficiency and timeliness of appropriate etiological diagnosis of ME, thus improving patient access and clinical decision making. It could be useful in places with a shortage of specialists and for readers that evaluate OCT scans remotely. The Association for Research in Vision and Ophthalmology 2022-09-28 /pmc/articles/PMC9526369/ /pubmed/36169966 http://dx.doi.org/10.1167/tvst.11.9.29 Text en Copyright 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
spellingShingle Artificial Intelligence
Padilla-Pantoja, Fabio Daniel
Sanchez, Yeison D.
Quijano-Nieto, Bernardo Alfonso
Perdomo, Oscar J.
Gonzalez, Fabio A.
Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title_full Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title_fullStr Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title_full_unstemmed Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title_short Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans
title_sort etiology of macular edema defined by deep learning in optical coherence tomography scans
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526369/
https://www.ncbi.nlm.nih.gov/pubmed/36169966
http://dx.doi.org/10.1167/tvst.11.9.29
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