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Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression
Immune system dysregulation is associated with tumor incidence and growth. Here, we established an RNA-based individualized immune signature associated with prognosis for nonsmall cell lung cancer (NSCLC) to guide adjuvant therapy. We downloaded publicly accessible data on RNA expression and clinica...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526605/ https://www.ncbi.nlm.nih.gov/pubmed/36193311 http://dx.doi.org/10.1155/2022/4779811 |
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author | Cao, Ying Zhu, Hongyu Shen, Hailin Liu, Desen Li, Zhenkai Shang, Hailong Du, Hongdi Wang, Ying Ye, Juan |
author_facet | Cao, Ying Zhu, Hongyu Shen, Hailin Liu, Desen Li, Zhenkai Shang, Hailong Du, Hongdi Wang, Ying Ye, Juan |
author_sort | Cao, Ying |
collection | PubMed |
description | Immune system dysregulation is associated with tumor incidence and growth. Here, we established an RNA-based individualized immune signature associated with prognosis for nonsmall cell lung cancer (NSCLC) to guide adjuvant therapy. We downloaded publicly accessible data on RNA expression and clinical characteristics of NSCLC from the Cancer Genome Atlas (TCGA). From immune-related genes (IRGs) retrieved from the immunology database and analysis portal (ImmPort) database, we then screened differentially expressed immune-related genes (DEIRGs). Using overall survival (OS) as a clinical endpoint, we identified 26 prognostic DEIRGs via univariate and multivariate Cox regression analysis, and then developed a risk model based on these 26 IRGs with an area under the curve (AUC) of 0.701, and its predictive ability independent from other clinical factors. We also downloaded tumor immune infiltrate data and analyzed the correlations between lymphocytic infiltration with our risk scores, but found no significant association. Furthermore, we retrieved 86 differentially expressed transcription factors (TFs) to assess their regulatory relationships with the 26 prognostic DEIRGs. In summary, we developed a robust risk model to predict survival in patients with NSCLC, based on the expression of 26 IRGs. It provides novel predictive and therapeutic molecular targets. |
format | Online Article Text |
id | pubmed-9526605 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-95266052022-10-02 Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression Cao, Ying Zhu, Hongyu Shen, Hailin Liu, Desen Li, Zhenkai Shang, Hailong Du, Hongdi Wang, Ying Ye, Juan Biomed Res Int Research Article Immune system dysregulation is associated with tumor incidence and growth. Here, we established an RNA-based individualized immune signature associated with prognosis for nonsmall cell lung cancer (NSCLC) to guide adjuvant therapy. We downloaded publicly accessible data on RNA expression and clinical characteristics of NSCLC from the Cancer Genome Atlas (TCGA). From immune-related genes (IRGs) retrieved from the immunology database and analysis portal (ImmPort) database, we then screened differentially expressed immune-related genes (DEIRGs). Using overall survival (OS) as a clinical endpoint, we identified 26 prognostic DEIRGs via univariate and multivariate Cox regression analysis, and then developed a risk model based on these 26 IRGs with an area under the curve (AUC) of 0.701, and its predictive ability independent from other clinical factors. We also downloaded tumor immune infiltrate data and analyzed the correlations between lymphocytic infiltration with our risk scores, but found no significant association. Furthermore, we retrieved 86 differentially expressed transcription factors (TFs) to assess their regulatory relationships with the 26 prognostic DEIRGs. In summary, we developed a robust risk model to predict survival in patients with NSCLC, based on the expression of 26 IRGs. It provides novel predictive and therapeutic molecular targets. Hindawi 2022-09-19 /pmc/articles/PMC9526605/ /pubmed/36193311 http://dx.doi.org/10.1155/2022/4779811 Text en Copyright © 2022 Ying Cao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Cao, Ying Zhu, Hongyu Shen, Hailin Liu, Desen Li, Zhenkai Shang, Hailong Du, Hongdi Wang, Ying Ye, Juan Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title | Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title_full | Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title_fullStr | Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title_full_unstemmed | Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title_short | Prognostic Index for Nonsmall Cell Lung Cancer Based on Immune-Related Genes Expression |
title_sort | prognostic index for nonsmall cell lung cancer based on immune-related genes expression |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526605/ https://www.ncbi.nlm.nih.gov/pubmed/36193311 http://dx.doi.org/10.1155/2022/4779811 |
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