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COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencin...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526730/ https://www.ncbi.nlm.nih.gov/pubmed/36182938 http://dx.doi.org/10.1038/s41597-022-01697-5 |
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author | Díez-Villanueva, Anna Sanz-Pamplona, Rebeca Solé, Xavier Cordero, David Crous-Bou, Marta Guinó, Elisabet Lopez-Doriga, Adriana Berenguer, Antoni Aussó, Susanna Paré-Brunet, Laia Obón-Santacana, Mireia Moratalla-Navarro, Ferran Salazar, Ramon Sanjuan, Xavier Santos, Cristina Biondo, Sebastiano Diez-Obrero, Virginia Garcia-Serrano, Ainhoa Alonso, Maria Henar Carreras-Torres, Robert Closa, Adria Moreno, Víctor |
author_facet | Díez-Villanueva, Anna Sanz-Pamplona, Rebeca Solé, Xavier Cordero, David Crous-Bou, Marta Guinó, Elisabet Lopez-Doriga, Adriana Berenguer, Antoni Aussó, Susanna Paré-Brunet, Laia Obón-Santacana, Mireia Moratalla-Navarro, Ferran Salazar, Ramon Sanjuan, Xavier Santos, Cristina Biondo, Sebastiano Diez-Obrero, Virginia Garcia-Serrano, Ainhoa Alonso, Maria Henar Carreras-Torres, Robert Closa, Adria Moreno, Víctor |
author_sort | Díez-Villanueva, Anna |
collection | PubMed |
description | Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencing and micro-RNAs (miRNAs) expression. It also includes data from copy number variation (CNV) from tumoral samples. In addition, clinical data from all these samples is available. The aims of the project were to explore and integrate these datasets to describe colon cancer at molecular level and to compare normal and tumoral tissues. Also, to improve screening by finding biomarkers for the diagnosis and prognosis of colon cancer. This project has its own website including four browsers allowing users to explore Colonomics datasets. Since generated data could be reuse for the scientific community for exploratory or validation purposes, here we describe omics datasets included in the Colonomics project as well as results from multi-omics layers integration. |
format | Online Article Text |
id | pubmed-9526730 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-95267302022-10-03 COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients Díez-Villanueva, Anna Sanz-Pamplona, Rebeca Solé, Xavier Cordero, David Crous-Bou, Marta Guinó, Elisabet Lopez-Doriga, Adriana Berenguer, Antoni Aussó, Susanna Paré-Brunet, Laia Obón-Santacana, Mireia Moratalla-Navarro, Ferran Salazar, Ramon Sanjuan, Xavier Santos, Cristina Biondo, Sebastiano Diez-Obrero, Virginia Garcia-Serrano, Ainhoa Alonso, Maria Henar Carreras-Torres, Robert Closa, Adria Moreno, Víctor Sci Data Data Descriptor Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencing and micro-RNAs (miRNAs) expression. It also includes data from copy number variation (CNV) from tumoral samples. In addition, clinical data from all these samples is available. The aims of the project were to explore and integrate these datasets to describe colon cancer at molecular level and to compare normal and tumoral tissues. Also, to improve screening by finding biomarkers for the diagnosis and prognosis of colon cancer. This project has its own website including four browsers allowing users to explore Colonomics datasets. Since generated data could be reuse for the scientific community for exploratory or validation purposes, here we describe omics datasets included in the Colonomics project as well as results from multi-omics layers integration. Nature Publishing Group UK 2022-10-01 /pmc/articles/PMC9526730/ /pubmed/36182938 http://dx.doi.org/10.1038/s41597-022-01697-5 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Díez-Villanueva, Anna Sanz-Pamplona, Rebeca Solé, Xavier Cordero, David Crous-Bou, Marta Guinó, Elisabet Lopez-Doriga, Adriana Berenguer, Antoni Aussó, Susanna Paré-Brunet, Laia Obón-Santacana, Mireia Moratalla-Navarro, Ferran Salazar, Ramon Sanjuan, Xavier Santos, Cristina Biondo, Sebastiano Diez-Obrero, Virginia Garcia-Serrano, Ainhoa Alonso, Maria Henar Carreras-Torres, Robert Closa, Adria Moreno, Víctor COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title | COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title_full | COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title_fullStr | COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title_full_unstemmed | COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title_short | COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
title_sort | colonomics - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526730/ https://www.ncbi.nlm.nih.gov/pubmed/36182938 http://dx.doi.org/10.1038/s41597-022-01697-5 |
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