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COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients

Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencin...

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Autores principales: Díez-Villanueva, Anna, Sanz-Pamplona, Rebeca, Solé, Xavier, Cordero, David, Crous-Bou, Marta, Guinó, Elisabet, Lopez-Doriga, Adriana, Berenguer, Antoni, Aussó, Susanna, Paré-Brunet, Laia, Obón-Santacana, Mireia, Moratalla-Navarro, Ferran, Salazar, Ramon, Sanjuan, Xavier, Santos, Cristina, Biondo, Sebastiano, Diez-Obrero, Virginia, Garcia-Serrano, Ainhoa, Alonso, Maria Henar, Carreras-Torres, Robert, Closa, Adria, Moreno, Víctor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526730/
https://www.ncbi.nlm.nih.gov/pubmed/36182938
http://dx.doi.org/10.1038/s41597-022-01697-5
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author Díez-Villanueva, Anna
Sanz-Pamplona, Rebeca
Solé, Xavier
Cordero, David
Crous-Bou, Marta
Guinó, Elisabet
Lopez-Doriga, Adriana
Berenguer, Antoni
Aussó, Susanna
Paré-Brunet, Laia
Obón-Santacana, Mireia
Moratalla-Navarro, Ferran
Salazar, Ramon
Sanjuan, Xavier
Santos, Cristina
Biondo, Sebastiano
Diez-Obrero, Virginia
Garcia-Serrano, Ainhoa
Alonso, Maria Henar
Carreras-Torres, Robert
Closa, Adria
Moreno, Víctor
author_facet Díez-Villanueva, Anna
Sanz-Pamplona, Rebeca
Solé, Xavier
Cordero, David
Crous-Bou, Marta
Guinó, Elisabet
Lopez-Doriga, Adriana
Berenguer, Antoni
Aussó, Susanna
Paré-Brunet, Laia
Obón-Santacana, Mireia
Moratalla-Navarro, Ferran
Salazar, Ramon
Sanjuan, Xavier
Santos, Cristina
Biondo, Sebastiano
Diez-Obrero, Virginia
Garcia-Serrano, Ainhoa
Alonso, Maria Henar
Carreras-Torres, Robert
Closa, Adria
Moreno, Víctor
author_sort Díez-Villanueva, Anna
collection PubMed
description Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencing and micro-RNAs (miRNAs) expression. It also includes data from copy number variation (CNV) from tumoral samples. In addition, clinical data from all these samples is available. The aims of the project were to explore and integrate these datasets to describe colon cancer at molecular level and to compare normal and tumoral tissues. Also, to improve screening by finding biomarkers for the diagnosis and prognosis of colon cancer. This project has its own website including four browsers allowing users to explore Colonomics datasets. Since generated data could be reuse for the scientific community for exploratory or validation purposes, here we describe omics datasets included in the Colonomics project as well as results from multi-omics layers integration.
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spelling pubmed-95267302022-10-03 COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients Díez-Villanueva, Anna Sanz-Pamplona, Rebeca Solé, Xavier Cordero, David Crous-Bou, Marta Guinó, Elisabet Lopez-Doriga, Adriana Berenguer, Antoni Aussó, Susanna Paré-Brunet, Laia Obón-Santacana, Mireia Moratalla-Navarro, Ferran Salazar, Ramon Sanjuan, Xavier Santos, Cristina Biondo, Sebastiano Diez-Obrero, Virginia Garcia-Serrano, Ainhoa Alonso, Maria Henar Carreras-Torres, Robert Closa, Adria Moreno, Víctor Sci Data Data Descriptor Colonomics is a multi-omics dataset that includes 250 samples: 50 samples from healthy colon mucosa donors and 100 paired samples from colon cancer patients (tumor/adjacent). From these samples, Colonomics project includes data from genotyping, DNA methylation, gene expression, whole exome sequencing and micro-RNAs (miRNAs) expression. It also includes data from copy number variation (CNV) from tumoral samples. In addition, clinical data from all these samples is available. The aims of the project were to explore and integrate these datasets to describe colon cancer at molecular level and to compare normal and tumoral tissues. Also, to improve screening by finding biomarkers for the diagnosis and prognosis of colon cancer. This project has its own website including four browsers allowing users to explore Colonomics datasets. Since generated data could be reuse for the scientific community for exploratory or validation purposes, here we describe omics datasets included in the Colonomics project as well as results from multi-omics layers integration. Nature Publishing Group UK 2022-10-01 /pmc/articles/PMC9526730/ /pubmed/36182938 http://dx.doi.org/10.1038/s41597-022-01697-5 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Díez-Villanueva, Anna
Sanz-Pamplona, Rebeca
Solé, Xavier
Cordero, David
Crous-Bou, Marta
Guinó, Elisabet
Lopez-Doriga, Adriana
Berenguer, Antoni
Aussó, Susanna
Paré-Brunet, Laia
Obón-Santacana, Mireia
Moratalla-Navarro, Ferran
Salazar, Ramon
Sanjuan, Xavier
Santos, Cristina
Biondo, Sebastiano
Diez-Obrero, Virginia
Garcia-Serrano, Ainhoa
Alonso, Maria Henar
Carreras-Torres, Robert
Closa, Adria
Moreno, Víctor
COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title_full COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title_fullStr COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title_full_unstemmed COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title_short COLONOMICS - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
title_sort colonomics - integrative omics data of one hundred paired normal-tumoral samples from colon cancer patients
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9526730/
https://www.ncbi.nlm.nih.gov/pubmed/36182938
http://dx.doi.org/10.1038/s41597-022-01697-5
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