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tRNA derived small RNAs—Small players with big roles

In the past 2 decades, small non-coding RNAs derived from tRNA (tsRNAs or tRNA derived fragments; tRFs) have emerged as new powerful players in the field of small RNA mediated regulation of gene expression, translation, and epigenetic control. tRFs have been identified from evolutionarily divergent...

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Autores principales: George, Suja, Rafi, Mohammed, Aldarmaki, Maitha, ElSiddig, Mohamed, Al Nuaimi, Mariam, Amiri, Khaled M. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527309/
https://www.ncbi.nlm.nih.gov/pubmed/36199575
http://dx.doi.org/10.3389/fgene.2022.997780
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author George, Suja
Rafi, Mohammed
Aldarmaki, Maitha
ElSiddig, Mohamed
Al Nuaimi, Mariam
Amiri, Khaled M. A.
author_facet George, Suja
Rafi, Mohammed
Aldarmaki, Maitha
ElSiddig, Mohamed
Al Nuaimi, Mariam
Amiri, Khaled M. A.
author_sort George, Suja
collection PubMed
description In the past 2 decades, small non-coding RNAs derived from tRNA (tsRNAs or tRNA derived fragments; tRFs) have emerged as new powerful players in the field of small RNA mediated regulation of gene expression, translation, and epigenetic control. tRFs have been identified from evolutionarily divergent organisms from Archaea, the higher plants, to humans. Recent studies have confirmed their roles in cancers and other metabolic disorders in humans and experimental models. They have been implicated in biotic and abiotic stress responses in plants as well. In this review, we summarize the current knowledge on tRFs including types of tRFs, their biogenesis, and mechanisms of action. The review also highlights recent studies involving differential expression profiling of tRFs and elucidation of specific functions of individual tRFs from various species. We also discuss potential considerations while designing experiments involving tRFs identification and characterization and list the available bioinformatics tools for this purpose.
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spelling pubmed-95273092022-10-04 tRNA derived small RNAs—Small players with big roles George, Suja Rafi, Mohammed Aldarmaki, Maitha ElSiddig, Mohamed Al Nuaimi, Mariam Amiri, Khaled M. A. Front Genet Genetics In the past 2 decades, small non-coding RNAs derived from tRNA (tsRNAs or tRNA derived fragments; tRFs) have emerged as new powerful players in the field of small RNA mediated regulation of gene expression, translation, and epigenetic control. tRFs have been identified from evolutionarily divergent organisms from Archaea, the higher plants, to humans. Recent studies have confirmed their roles in cancers and other metabolic disorders in humans and experimental models. They have been implicated in biotic and abiotic stress responses in plants as well. In this review, we summarize the current knowledge on tRFs including types of tRFs, their biogenesis, and mechanisms of action. The review also highlights recent studies involving differential expression profiling of tRFs and elucidation of specific functions of individual tRFs from various species. We also discuss potential considerations while designing experiments involving tRFs identification and characterization and list the available bioinformatics tools for this purpose. Frontiers Media S.A. 2022-09-19 /pmc/articles/PMC9527309/ /pubmed/36199575 http://dx.doi.org/10.3389/fgene.2022.997780 Text en Copyright © 2022 George, Rafi, Aldarmaki, ElSiddig, Al Nuaimi and Amiri. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
George, Suja
Rafi, Mohammed
Aldarmaki, Maitha
ElSiddig, Mohamed
Al Nuaimi, Mariam
Amiri, Khaled M. A.
tRNA derived small RNAs—Small players with big roles
title tRNA derived small RNAs—Small players with big roles
title_full tRNA derived small RNAs—Small players with big roles
title_fullStr tRNA derived small RNAs—Small players with big roles
title_full_unstemmed tRNA derived small RNAs—Small players with big roles
title_short tRNA derived small RNAs—Small players with big roles
title_sort trna derived small rnas—small players with big roles
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527309/
https://www.ncbi.nlm.nih.gov/pubmed/36199575
http://dx.doi.org/10.3389/fgene.2022.997780
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