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ERCC5 , HES6 and RORA are potential diagnostic markers of coronary artery disease
The mortality rate of patients with coronary artery disease (CAD) increases year by year, and the age of onset is decreasing, primarily because of the lack of an efficient and convenient diagnostic method for CAD. In the present study, we aimed to detect CAD‐correlated biomarkers and the regulatory...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527589/ https://www.ncbi.nlm.nih.gov/pubmed/35934844 http://dx.doi.org/10.1002/2211-5463.13469 |
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author | Bai, Zhifeng Luo, Yuanyuan Tian, Linyun |
author_facet | Bai, Zhifeng Luo, Yuanyuan Tian, Linyun |
author_sort | Bai, Zhifeng |
collection | PubMed |
description | The mortality rate of patients with coronary artery disease (CAD) increases year by year, and the age of onset is decreasing, primarily because of the lack of an efficient and convenient diagnostic method for CAD. In the present study, we aimed to detect CAD‐correlated biomarkers and the regulatory pathways involved through weighted co‐expression network analysis. The microarray data originated from 93 CAD patients and 48 controls within the Gene Expression Omnibus (GEO) database. The gene network was implemented by weighted gene co‐expression network analysis, and the genes were observed to fall into a range of modules. We took the intersection of genes in the modules most correlated with CAD with the differentially expressed genes of CAD, which were identified by applying the limma package. Lasso regression and support vector machine recursive feature elimination algorithms were used to determine CAD candidate signature genes. The biomarkers for diagnosing CAD were detected by validating candidate signature gene diagnostic capabilities (receiver operating characteristic curves) based on data sets from GEO. Three modules were selected, and 26 vital genes were identified. Eight of these genes were reported as the optimal candidate features in terms of CAD diagnosis. Through receiver operating characteristic curve analysis, we identified three genes (ERCC5, HES6 and RORA; area under the curve > 0.8) capable of distinguishing CAD from the control, and observed that these genes are correlated with the immune response. In summary, ERCC5, HES6 and RORA may have potential for diagnosis of CAD. |
format | Online Article Text |
id | pubmed-9527589 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95275892022-10-06 ERCC5 , HES6 and RORA are potential diagnostic markers of coronary artery disease Bai, Zhifeng Luo, Yuanyuan Tian, Linyun FEBS Open Bio Research Articles The mortality rate of patients with coronary artery disease (CAD) increases year by year, and the age of onset is decreasing, primarily because of the lack of an efficient and convenient diagnostic method for CAD. In the present study, we aimed to detect CAD‐correlated biomarkers and the regulatory pathways involved through weighted co‐expression network analysis. The microarray data originated from 93 CAD patients and 48 controls within the Gene Expression Omnibus (GEO) database. The gene network was implemented by weighted gene co‐expression network analysis, and the genes were observed to fall into a range of modules. We took the intersection of genes in the modules most correlated with CAD with the differentially expressed genes of CAD, which were identified by applying the limma package. Lasso regression and support vector machine recursive feature elimination algorithms were used to determine CAD candidate signature genes. The biomarkers for diagnosing CAD were detected by validating candidate signature gene diagnostic capabilities (receiver operating characteristic curves) based on data sets from GEO. Three modules were selected, and 26 vital genes were identified. Eight of these genes were reported as the optimal candidate features in terms of CAD diagnosis. Through receiver operating characteristic curve analysis, we identified three genes (ERCC5, HES6 and RORA; area under the curve > 0.8) capable of distinguishing CAD from the control, and observed that these genes are correlated with the immune response. In summary, ERCC5, HES6 and RORA may have potential for diagnosis of CAD. John Wiley and Sons Inc. 2022-08-07 /pmc/articles/PMC9527589/ /pubmed/35934844 http://dx.doi.org/10.1002/2211-5463.13469 Text en © 2022 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Bai, Zhifeng Luo, Yuanyuan Tian, Linyun ERCC5 , HES6 and RORA are potential diagnostic markers of coronary artery disease |
title |
ERCC5
,
HES6
and
RORA
are potential diagnostic markers of coronary artery disease |
title_full |
ERCC5
,
HES6
and
RORA
are potential diagnostic markers of coronary artery disease |
title_fullStr |
ERCC5
,
HES6
and
RORA
are potential diagnostic markers of coronary artery disease |
title_full_unstemmed |
ERCC5
,
HES6
and
RORA
are potential diagnostic markers of coronary artery disease |
title_short |
ERCC5
,
HES6
and
RORA
are potential diagnostic markers of coronary artery disease |
title_sort | ercc5
,
hes6
and
rora
are potential diagnostic markers of coronary artery disease |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527589/ https://www.ncbi.nlm.nih.gov/pubmed/35934844 http://dx.doi.org/10.1002/2211-5463.13469 |
work_keys_str_mv | AT baizhifeng ercc5hes6androraarepotentialdiagnosticmarkersofcoronaryarterydisease AT luoyuanyuan ercc5hes6androraarepotentialdiagnosticmarkersofcoronaryarterydisease AT tianlinyun ercc5hes6androraarepotentialdiagnosticmarkersofcoronaryarterydisease |