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Trajectory Surface Hopping for a Polarizable Embedding QM/MM Formulation
[Image: see text] We present the implementation of trajectory surface-hopping nonadiabatic dynamics for a polarizable embedding QM/MM formulation. Time-dependent density functional theory was used at the quantum mechanical level of theory, whereas the molecular mechanics description involved the pol...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527758/ https://www.ncbi.nlm.nih.gov/pubmed/36107729 http://dx.doi.org/10.1021/acs.jpca.2c04756 |
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author | Bondanza, Mattia Demoulin, Baptiste Lipparini, Filippo Barbatti, Mario Mennucci, Benedetta |
author_facet | Bondanza, Mattia Demoulin, Baptiste Lipparini, Filippo Barbatti, Mario Mennucci, Benedetta |
author_sort | Bondanza, Mattia |
collection | PubMed |
description | [Image: see text] We present the implementation of trajectory surface-hopping nonadiabatic dynamics for a polarizable embedding QM/MM formulation. Time-dependent density functional theory was used at the quantum mechanical level of theory, whereas the molecular mechanics description involved the polarizable AMOEBA force field. This implementation has been obtained by integrating the surface-hopping program Newton-X NS with an interface between the Gaussian 16 and the Tinker suites of codes to calculate QM/AMOEBA energies and forces. The implementation has been tested on a photoinduced electron-driven proton-transfer reaction involving pyrimidine and a hydrogen-bonded water surrounded by a small cluster of water molecules and within a large water droplet. |
format | Online Article Text |
id | pubmed-9527758 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95277582022-10-04 Trajectory Surface Hopping for a Polarizable Embedding QM/MM Formulation Bondanza, Mattia Demoulin, Baptiste Lipparini, Filippo Barbatti, Mario Mennucci, Benedetta J Phys Chem A [Image: see text] We present the implementation of trajectory surface-hopping nonadiabatic dynamics for a polarizable embedding QM/MM formulation. Time-dependent density functional theory was used at the quantum mechanical level of theory, whereas the molecular mechanics description involved the polarizable AMOEBA force field. This implementation has been obtained by integrating the surface-hopping program Newton-X NS with an interface between the Gaussian 16 and the Tinker suites of codes to calculate QM/AMOEBA energies and forces. The implementation has been tested on a photoinduced electron-driven proton-transfer reaction involving pyrimidine and a hydrogen-bonded water surrounded by a small cluster of water molecules and within a large water droplet. American Chemical Society 2022-09-15 2022-09-29 /pmc/articles/PMC9527758/ /pubmed/36107729 http://dx.doi.org/10.1021/acs.jpca.2c04756 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Bondanza, Mattia Demoulin, Baptiste Lipparini, Filippo Barbatti, Mario Mennucci, Benedetta Trajectory Surface Hopping for a Polarizable Embedding QM/MM Formulation |
title | Trajectory Surface
Hopping for a Polarizable Embedding
QM/MM Formulation |
title_full | Trajectory Surface
Hopping for a Polarizable Embedding
QM/MM Formulation |
title_fullStr | Trajectory Surface
Hopping for a Polarizable Embedding
QM/MM Formulation |
title_full_unstemmed | Trajectory Surface
Hopping for a Polarizable Embedding
QM/MM Formulation |
title_short | Trajectory Surface
Hopping for a Polarizable Embedding
QM/MM Formulation |
title_sort | trajectory surface
hopping for a polarizable embedding
qm/mm formulation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527758/ https://www.ncbi.nlm.nih.gov/pubmed/36107729 http://dx.doi.org/10.1021/acs.jpca.2c04756 |
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