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MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale

The static structure factor and the undulation dynamics of a solid-supported membrane stack have previously been calculated by Romanov and Ul’yanov [Romanov & Ul’yanov (2002). Phys. Rev. E, 66, 061701]. Based on this prior work, the calculation has been extended to cover the membrane dynamics, i...

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Autores principales: Hayward, Dominic W., Jaksch, Sebastian, Fomina, Margarita, Dubey, Purushottam S., Frielinghaus, Henrich, Holderer, Olaf, Monkenbusch, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527762/
https://www.ncbi.nlm.nih.gov/pubmed/36189744
http://dx.doi.org/10.1107/S2059798322008701
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author Hayward, Dominic W.
Jaksch, Sebastian
Fomina, Margarita
Dubey, Purushottam S.
Frielinghaus, Henrich
Holderer, Olaf
Monkenbusch, Michael
author_facet Hayward, Dominic W.
Jaksch, Sebastian
Fomina, Margarita
Dubey, Purushottam S.
Frielinghaus, Henrich
Holderer, Olaf
Monkenbusch, Michael
author_sort Hayward, Dominic W.
collection PubMed
description The static structure factor and the undulation dynamics of a solid-supported membrane stack have previously been calculated by Romanov and Ul’yanov [Romanov & Ul’yanov (2002). Phys. Rev. E, 66, 061701]. Based on this prior work, the calculation has been extended to cover the membrane dynamics, i.e. the intermediate scattering function as a Fourier transform of the van Hove correlation function of the membrane stack. Fortran code which calculates the intermediate scattering function for a membrane stack on a solid support is presented. It allows the static and dynamic scattering functions to be calculated according to the derivation of Romanov and Ul’yanov. The physical properties of supported phospholipid bilayers can be examined in this way and the results can be directly compared with results obtained from grazing-incidence neutron spin-echo spectroscopy experiments.
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spelling pubmed-95277622022-10-05 MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale Hayward, Dominic W. Jaksch, Sebastian Fomina, Margarita Dubey, Purushottam S. Frielinghaus, Henrich Holderer, Olaf Monkenbusch, Michael Acta Crystallogr D Struct Biol Research Papers The static structure factor and the undulation dynamics of a solid-supported membrane stack have previously been calculated by Romanov and Ul’yanov [Romanov & Ul’yanov (2002). Phys. Rev. E, 66, 061701]. Based on this prior work, the calculation has been extended to cover the membrane dynamics, i.e. the intermediate scattering function as a Fourier transform of the van Hove correlation function of the membrane stack. Fortran code which calculates the intermediate scattering function for a membrane stack on a solid support is presented. It allows the static and dynamic scattering functions to be calculated according to the derivation of Romanov and Ul’yanov. The physical properties of supported phospholipid bilayers can be examined in this way and the results can be directly compared with results obtained from grazing-incidence neutron spin-echo spectroscopy experiments. International Union of Crystallography 2022-09-27 /pmc/articles/PMC9527762/ /pubmed/36189744 http://dx.doi.org/10.1107/S2059798322008701 Text en © Dominic W. Hayward et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Hayward, Dominic W.
Jaksch, Sebastian
Fomina, Margarita
Dubey, Purushottam S.
Frielinghaus, Henrich
Holderer, Olaf
Monkenbusch, Michael
MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title_full MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title_fullStr MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title_full_unstemmed MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title_short MembraneDyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
title_sort membranedyn: simulating the dynamics of supported membrane stacks on the nanosecond timescale
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9527762/
https://www.ncbi.nlm.nih.gov/pubmed/36189744
http://dx.doi.org/10.1107/S2059798322008701
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