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GIFT: An ImageJ macro for automated fiber diameter quantification

This paper details the development and testing of the GIFT macro, which is a freely available program for ImageJ for the automated measurement of fiber diameters in SEM images of electrospun materials. The GIFT macro applies a validated method which distinguishes fiber diameters based on distance fr...

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Detalles Bibliográficos
Autores principales: Huling, Jennifer, Götz, Andreas, Grabow, Niels, Illner, Sabine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9529089/
https://www.ncbi.nlm.nih.gov/pubmed/36191031
http://dx.doi.org/10.1371/journal.pone.0275528
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author Huling, Jennifer
Götz, Andreas
Grabow, Niels
Illner, Sabine
author_facet Huling, Jennifer
Götz, Andreas
Grabow, Niels
Illner, Sabine
author_sort Huling, Jennifer
collection PubMed
description This paper details the development and testing of the GIFT macro, which is a freely available program for ImageJ for the automated measurement of fiber diameters in SEM images of electrospun materials. The GIFT macro applies a validated method which distinguishes fiber diameters based on distance frequencies within an image. In this work, we introduce an applied version of the GIFT method which has been designed to be user-friendly while still allowing complete control over the various parameters involved in the image processing steps. The macro quickly processes large data sets and creates results that are reproducible and accurate. The program outputs both raw data and fiber diameter averages, so that the user can quickly assess the results and has the opportunity for further analysis if desired. The GIFT macro was compared directly to other software designed for fiber diameter measurements and was found to have comparable or lower average error, especially when measuring very small fibers, and reduced processing times per image. The macro, detailed instructions for use, and sample images are freely available online (https://github.com/IBMTRostock/GIFT). We believe that the GIFT macro is a valuable new tool for researchers looking to quickly, easily and reliably assess fiber diameters in electrospun materials.
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spelling pubmed-95290892022-10-04 GIFT: An ImageJ macro for automated fiber diameter quantification Huling, Jennifer Götz, Andreas Grabow, Niels Illner, Sabine PLoS One Research Article This paper details the development and testing of the GIFT macro, which is a freely available program for ImageJ for the automated measurement of fiber diameters in SEM images of electrospun materials. The GIFT macro applies a validated method which distinguishes fiber diameters based on distance frequencies within an image. In this work, we introduce an applied version of the GIFT method which has been designed to be user-friendly while still allowing complete control over the various parameters involved in the image processing steps. The macro quickly processes large data sets and creates results that are reproducible and accurate. The program outputs both raw data and fiber diameter averages, so that the user can quickly assess the results and has the opportunity for further analysis if desired. The GIFT macro was compared directly to other software designed for fiber diameter measurements and was found to have comparable or lower average error, especially when measuring very small fibers, and reduced processing times per image. The macro, detailed instructions for use, and sample images are freely available online (https://github.com/IBMTRostock/GIFT). We believe that the GIFT macro is a valuable new tool for researchers looking to quickly, easily and reliably assess fiber diameters in electrospun materials. Public Library of Science 2022-10-03 /pmc/articles/PMC9529089/ /pubmed/36191031 http://dx.doi.org/10.1371/journal.pone.0275528 Text en © 2022 Huling et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Huling, Jennifer
Götz, Andreas
Grabow, Niels
Illner, Sabine
GIFT: An ImageJ macro for automated fiber diameter quantification
title GIFT: An ImageJ macro for automated fiber diameter quantification
title_full GIFT: An ImageJ macro for automated fiber diameter quantification
title_fullStr GIFT: An ImageJ macro for automated fiber diameter quantification
title_full_unstemmed GIFT: An ImageJ macro for automated fiber diameter quantification
title_short GIFT: An ImageJ macro for automated fiber diameter quantification
title_sort gift: an imagej macro for automated fiber diameter quantification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9529089/
https://www.ncbi.nlm.nih.gov/pubmed/36191031
http://dx.doi.org/10.1371/journal.pone.0275528
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