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Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data
Graph-theoretical methods have been widely used to study human brain networks in psychiatric disorders. However, the focus has primarily been on global graphic metrics with little attention to the information contained in paths connecting brain regions. Details of disruption of these paths may be hi...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531579/ https://www.ncbi.nlm.nih.gov/pubmed/36204419 http://dx.doi.org/10.1162/netn_a_00247 |
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author | Falakshahi, Haleh Rokham, Hooman Fu, Zening Iraji, Armin Mathalon, Daniel H. Ford, Judith M. Mueller, Bryon A. Preda, Adrian van Erp, Theo G. M. Turner, Jessica A. Plis, Sergey Calhoun, Vince D. |
author_facet | Falakshahi, Haleh Rokham, Hooman Fu, Zening Iraji, Armin Mathalon, Daniel H. Ford, Judith M. Mueller, Bryon A. Preda, Adrian van Erp, Theo G. M. Turner, Jessica A. Plis, Sergey Calhoun, Vince D. |
author_sort | Falakshahi, Haleh |
collection | PubMed |
description | Graph-theoretical methods have been widely used to study human brain networks in psychiatric disorders. However, the focus has primarily been on global graphic metrics with little attention to the information contained in paths connecting brain regions. Details of disruption of these paths may be highly informative for understanding disease mechanisms. To detect the absence or addition of multistep paths in the patient group, we provide an algorithm estimating edges that contribute to these paths with reference to the control group. We next examine where pairs of nodes were connected through paths in both groups by using a covariance decomposition method. We apply our method to study resting-state fMRI data in schizophrenia versus controls. Results show several disconnectors in schizophrenia within and between functional domains, particularly within the default mode and cognitive control networks. Additionally, we identify new edges generating additional paths. Moreover, although paths exist in both groups, these paths take unique trajectories and have a significant contribution to the decomposition. The proposed path analysis provides a way to characterize individuals by evaluating changes in paths, rather than just focusing on the pairwise relationships. Our results show promise for identifying path-based metrics in neuroimaging data. |
format | Online Article Text |
id | pubmed-9531579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-95315792022-10-05 Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data Falakshahi, Haleh Rokham, Hooman Fu, Zening Iraji, Armin Mathalon, Daniel H. Ford, Judith M. Mueller, Bryon A. Preda, Adrian van Erp, Theo G. M. Turner, Jessica A. Plis, Sergey Calhoun, Vince D. Netw Neurosci Methods Graph-theoretical methods have been widely used to study human brain networks in psychiatric disorders. However, the focus has primarily been on global graphic metrics with little attention to the information contained in paths connecting brain regions. Details of disruption of these paths may be highly informative for understanding disease mechanisms. To detect the absence or addition of multistep paths in the patient group, we provide an algorithm estimating edges that contribute to these paths with reference to the control group. We next examine where pairs of nodes were connected through paths in both groups by using a covariance decomposition method. We apply our method to study resting-state fMRI data in schizophrenia versus controls. Results show several disconnectors in schizophrenia within and between functional domains, particularly within the default mode and cognitive control networks. Additionally, we identify new edges generating additional paths. Moreover, although paths exist in both groups, these paths take unique trajectories and have a significant contribution to the decomposition. The proposed path analysis provides a way to characterize individuals by evaluating changes in paths, rather than just focusing on the pairwise relationships. Our results show promise for identifying path-based metrics in neuroimaging data. MIT Press 2022-07-01 /pmc/articles/PMC9531579/ /pubmed/36204419 http://dx.doi.org/10.1162/netn_a_00247 Text en © 2022 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Methods Falakshahi, Haleh Rokham, Hooman Fu, Zening Iraji, Armin Mathalon, Daniel H. Ford, Judith M. Mueller, Bryon A. Preda, Adrian van Erp, Theo G. M. Turner, Jessica A. Plis, Sergey Calhoun, Vince D. Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title | Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title_full | Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title_fullStr | Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title_full_unstemmed | Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title_short | Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data |
title_sort | path analysis: a method to estimate altered pathways in time-varying graphs of neuroimaging data |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531579/ https://www.ncbi.nlm.nih.gov/pubmed/36204419 http://dx.doi.org/10.1162/netn_a_00247 |
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