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The Neurodata Without Borders ecosystem for neurophysiological data science
The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, a...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531949/ https://www.ncbi.nlm.nih.gov/pubmed/36193886 http://dx.doi.org/10.7554/eLife.78362 |
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author | Rübel, Oliver Tritt, Andrew Ly, Ryan Dichter, Benjamin K Ghosh, Satrajit Niu, Lawrence Baker, Pamela Soltesz, Ivan Ng, Lydia Svoboda, Karel Frank, Loren Bouchard, Kristofer E |
author_facet | Rübel, Oliver Tritt, Andrew Ly, Ryan Dichter, Benjamin K Ghosh, Satrajit Niu, Lawrence Baker, Pamela Soltesz, Ivan Ng, Lydia Svoboda, Karel Frank, Loren Bouchard, Kristofer E |
author_sort | Rübel, Oliver |
collection | PubMed |
description | The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness. |
format | Online Article Text |
id | pubmed-9531949 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-95319492022-10-05 The Neurodata Without Borders ecosystem for neurophysiological data science Rübel, Oliver Tritt, Andrew Ly, Ryan Dichter, Benjamin K Ghosh, Satrajit Niu, Lawrence Baker, Pamela Soltesz, Ivan Ng, Lydia Svoboda, Karel Frank, Loren Bouchard, Kristofer E eLife Neuroscience The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness. eLife Sciences Publications, Ltd 2022-10-04 /pmc/articles/PMC9531949/ /pubmed/36193886 http://dx.doi.org/10.7554/eLife.78362 Text en © 2022, Rübel, Tritt, Ly et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Rübel, Oliver Tritt, Andrew Ly, Ryan Dichter, Benjamin K Ghosh, Satrajit Niu, Lawrence Baker, Pamela Soltesz, Ivan Ng, Lydia Svoboda, Karel Frank, Loren Bouchard, Kristofer E The Neurodata Without Borders ecosystem for neurophysiological data science |
title | The Neurodata Without Borders ecosystem for neurophysiological data science |
title_full | The Neurodata Without Borders ecosystem for neurophysiological data science |
title_fullStr | The Neurodata Without Borders ecosystem for neurophysiological data science |
title_full_unstemmed | The Neurodata Without Borders ecosystem for neurophysiological data science |
title_short | The Neurodata Without Borders ecosystem for neurophysiological data science |
title_sort | neurodata without borders ecosystem for neurophysiological data science |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531949/ https://www.ncbi.nlm.nih.gov/pubmed/36193886 http://dx.doi.org/10.7554/eLife.78362 |
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