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The Neurodata Without Borders ecosystem for neurophysiological data science

The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, a...

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Autores principales: Rübel, Oliver, Tritt, Andrew, Ly, Ryan, Dichter, Benjamin K, Ghosh, Satrajit, Niu, Lawrence, Baker, Pamela, Soltesz, Ivan, Ng, Lydia, Svoboda, Karel, Frank, Loren, Bouchard, Kristofer E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531949/
https://www.ncbi.nlm.nih.gov/pubmed/36193886
http://dx.doi.org/10.7554/eLife.78362
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author Rübel, Oliver
Tritt, Andrew
Ly, Ryan
Dichter, Benjamin K
Ghosh, Satrajit
Niu, Lawrence
Baker, Pamela
Soltesz, Ivan
Ng, Lydia
Svoboda, Karel
Frank, Loren
Bouchard, Kristofer E
author_facet Rübel, Oliver
Tritt, Andrew
Ly, Ryan
Dichter, Benjamin K
Ghosh, Satrajit
Niu, Lawrence
Baker, Pamela
Soltesz, Ivan
Ng, Lydia
Svoboda, Karel
Frank, Loren
Bouchard, Kristofer E
author_sort Rübel, Oliver
collection PubMed
description The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.
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spelling pubmed-95319492022-10-05 The Neurodata Without Borders ecosystem for neurophysiological data science Rübel, Oliver Tritt, Andrew Ly, Ryan Dichter, Benjamin K Ghosh, Satrajit Niu, Lawrence Baker, Pamela Soltesz, Ivan Ng, Lydia Svoboda, Karel Frank, Loren Bouchard, Kristofer E eLife Neuroscience The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB’s impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness. eLife Sciences Publications, Ltd 2022-10-04 /pmc/articles/PMC9531949/ /pubmed/36193886 http://dx.doi.org/10.7554/eLife.78362 Text en © 2022, Rübel, Tritt, Ly et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Rübel, Oliver
Tritt, Andrew
Ly, Ryan
Dichter, Benjamin K
Ghosh, Satrajit
Niu, Lawrence
Baker, Pamela
Soltesz, Ivan
Ng, Lydia
Svoboda, Karel
Frank, Loren
Bouchard, Kristofer E
The Neurodata Without Borders ecosystem for neurophysiological data science
title The Neurodata Without Borders ecosystem for neurophysiological data science
title_full The Neurodata Without Borders ecosystem for neurophysiological data science
title_fullStr The Neurodata Without Borders ecosystem for neurophysiological data science
title_full_unstemmed The Neurodata Without Borders ecosystem for neurophysiological data science
title_short The Neurodata Without Borders ecosystem for neurophysiological data science
title_sort neurodata without borders ecosystem for neurophysiological data science
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9531949/
https://www.ncbi.nlm.nih.gov/pubmed/36193886
http://dx.doi.org/10.7554/eLife.78362
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