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Lattice defects in quinacridone
Various lattice defects in the α(I)-phase of quinacridone (C(20)H(12)N(2)O(2)) were simulated using lattice-energy minimizations. α(I)-Quinacridone forms a chain structure in P 1, Z = 1. The molecules are connected by hydrogen bonds along [010], by π-stacking along [100] and by weak van der Waals in...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9533312/ http://dx.doi.org/10.1107/S205252062200779X |
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author | Brey, Dominik Scherer, Barbara Schmidt, Martin U. |
author_facet | Brey, Dominik Scherer, Barbara Schmidt, Martin U. |
author_sort | Brey, Dominik |
collection | PubMed |
description | Various lattice defects in the α(I)-phase of quinacridone (C(20)H(12)N(2)O(2)) were simulated using lattice-energy minimizations. α(I)-Quinacridone forms a chain structure in P 1, Z = 1. The molecules are connected by hydrogen bonds along [010], by π-stacking along [100] and by weak van der Waals interactions along [001]. α(I)-Quinacridone is inherently nanocrystalline. Lattice defects were calculated in correspondingly large supercells with up to 4464 atoms, using a previously evaluated force field. Vacancies, vacancy aggregates and interstitial molecules are energetically very unfavourable. A misorientation of a single molecule (flip around [010] by 180°) causes an energy increase of 243.7 kJ mol(−1). Various edge and screw dislocations were investigated. A screw dislocation along [010] causes an energy increase of ΔE = 38.0 kJ mol(−1) per molecule, all other line dislocations are even worse. In contrast, the rotation of an entire chain around the chain axis [010] by 180° leads to only a very small energy increase (ΔE = 1.6 kJ mol(−1)) and the real crystals probably contain a high number of such defects. Various planar defects were calculated, including different stacking disorders and misfit-layer structures with two different types of layers having different lateral periodicities. Stacking faults along [001] with herringbone stacking instead of parallel stacking are energetically quite favourable (ΔE = 2.2 kJ mol(−1)); the same is true for domains with misoriented molecules in the [001] direction. As an example for a bulk defect, domains are calculated in which blocks of 4 × 4 chains are rotated by 180° around [010], which leads to an energy increase of only 1.1 kJ mol(−1). Twinning by mirroring at the (001) plane is energetically favourable (ΔE = 0.9 kJ mol(−1)). This twinning was observed in an HRTEM image. It is probable that the crystallites also contain rotations of chains, layers or blocks around [010] by 180°, but these defects cause only a very slight modification of the molecular packing, which was not observable in the HRTEM image. The lattice defects in α(I)-quinacridone investigated here provide an insight into lattice defects, their energies and local structures. Similar lattice defects are expected to occur also in other similar organic chain structures. |
format | Online Article Text |
id | pubmed-9533312 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-95333122022-10-13 Lattice defects in quinacridone Brey, Dominik Scherer, Barbara Schmidt, Martin U. Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Various lattice defects in the α(I)-phase of quinacridone (C(20)H(12)N(2)O(2)) were simulated using lattice-energy minimizations. α(I)-Quinacridone forms a chain structure in P 1, Z = 1. The molecules are connected by hydrogen bonds along [010], by π-stacking along [100] and by weak van der Waals interactions along [001]. α(I)-Quinacridone is inherently nanocrystalline. Lattice defects were calculated in correspondingly large supercells with up to 4464 atoms, using a previously evaluated force field. Vacancies, vacancy aggregates and interstitial molecules are energetically very unfavourable. A misorientation of a single molecule (flip around [010] by 180°) causes an energy increase of 243.7 kJ mol(−1). Various edge and screw dislocations were investigated. A screw dislocation along [010] causes an energy increase of ΔE = 38.0 kJ mol(−1) per molecule, all other line dislocations are even worse. In contrast, the rotation of an entire chain around the chain axis [010] by 180° leads to only a very small energy increase (ΔE = 1.6 kJ mol(−1)) and the real crystals probably contain a high number of such defects. Various planar defects were calculated, including different stacking disorders and misfit-layer structures with two different types of layers having different lateral periodicities. Stacking faults along [001] with herringbone stacking instead of parallel stacking are energetically quite favourable (ΔE = 2.2 kJ mol(−1)); the same is true for domains with misoriented molecules in the [001] direction. As an example for a bulk defect, domains are calculated in which blocks of 4 × 4 chains are rotated by 180° around [010], which leads to an energy increase of only 1.1 kJ mol(−1). Twinning by mirroring at the (001) plane is energetically favourable (ΔE = 0.9 kJ mol(−1)). This twinning was observed in an HRTEM image. It is probable that the crystallites also contain rotations of chains, layers or blocks around [010] by 180°, but these defects cause only a very slight modification of the molecular packing, which was not observable in the HRTEM image. The lattice defects in α(I)-quinacridone investigated here provide an insight into lattice defects, their energies and local structures. Similar lattice defects are expected to occur also in other similar organic chain structures. International Union of Crystallography 2022-09-09 /pmc/articles/PMC9533312/ http://dx.doi.org/10.1107/S205252062200779X Text en © Dominik Brey et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Brey, Dominik Scherer, Barbara Schmidt, Martin U. Lattice defects in quinacridone |
title | Lattice defects in quinacridone |
title_full | Lattice defects in quinacridone |
title_fullStr | Lattice defects in quinacridone |
title_full_unstemmed | Lattice defects in quinacridone |
title_short | Lattice defects in quinacridone |
title_sort | lattice defects in quinacridone |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9533312/ http://dx.doi.org/10.1107/S205252062200779X |
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