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Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely im...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534418/ https://www.ncbi.nlm.nih.gov/pubmed/36197944 http://dx.doi.org/10.1371/journal.pone.0275250 |
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author | Wu, Guosong Eastwood, Cathy Zeng, Yong Quan, Hude Long, Quan Zhang, Zilong Ghali, William A. Bakal, Jeffrey Boussat, Bastien Flemons, Ward Forster, Alan Southern, Danielle A. Knudsen, Søren Popowich, Brittany Xu, Yuan |
author_facet | Wu, Guosong Eastwood, Cathy Zeng, Yong Quan, Hude Long, Quan Zhang, Zilong Ghali, William A. Bakal, Jeffrey Boussat, Bastien Flemons, Ward Forster, Alan Southern, Danielle A. Knudsen, Søren Popowich, Brittany Xu, Yuan |
author_sort | Wu, Guosong |
collection | PubMed |
description | BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely implemented and contain detailed and comprehensive information regarding all aspects of patient care, offering a valuable complement to administrative data. Harnessing the rich clinical data in EMRs offers a unique opportunity to improve detection, identify possible risk factors of AE and enhance surveillance. However, the methodological tools for detection of AEs within EMR need to be developed and validated. The objectives of this study are to develop EMR-based AE algorithms from hospital EMR data and assess AE algorithm’s validity in Canadian EMR data. METHODS: Patient EMR structured and text data from acute care hospitals in Calgary, Alberta, Canada will be linked with discharge abstract data (DAD) between 2010 and 2020 (n~1.5 million). AE algorithms development. First, a comprehensive list of AEs will be generated through a systematic literature review and expert recommendations. Second, these AEs will be mapped to EMR free texts using Natural Language Processing (NLP) technologies. Finally, an expert panel will assess the clinical relevance of the developed NLP algorithms. AE algorithms validation: We will test the newly developed AE algorithms on 10,000 randomly selected EMRs between 2010 to 2020 from Calgary, Alberta. Trained reviewers will review the selected 10,000 EMR charts to identify AEs that had occurred during hospitalization. Performance indicators (e.g., sensitivity, specificity, positive predictive value, negative predictive value, F(1) score, etc.) of the developed AE algorithms will be assessed using chart review data as the reference standard. DISCUSSION: The results of this project can be widely implemented in EMR based healthcare system to accurately and timely detect in-hospital AEs. |
format | Online Article Text |
id | pubmed-9534418 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-95344182022-10-06 Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol Wu, Guosong Eastwood, Cathy Zeng, Yong Quan, Hude Long, Quan Zhang, Zilong Ghali, William A. Bakal, Jeffrey Boussat, Bastien Flemons, Ward Forster, Alan Southern, Danielle A. Knudsen, Søren Popowich, Brittany Xu, Yuan PLoS One Study Protocol BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely implemented and contain detailed and comprehensive information regarding all aspects of patient care, offering a valuable complement to administrative data. Harnessing the rich clinical data in EMRs offers a unique opportunity to improve detection, identify possible risk factors of AE and enhance surveillance. However, the methodological tools for detection of AEs within EMR need to be developed and validated. The objectives of this study are to develop EMR-based AE algorithms from hospital EMR data and assess AE algorithm’s validity in Canadian EMR data. METHODS: Patient EMR structured and text data from acute care hospitals in Calgary, Alberta, Canada will be linked with discharge abstract data (DAD) between 2010 and 2020 (n~1.5 million). AE algorithms development. First, a comprehensive list of AEs will be generated through a systematic literature review and expert recommendations. Second, these AEs will be mapped to EMR free texts using Natural Language Processing (NLP) technologies. Finally, an expert panel will assess the clinical relevance of the developed NLP algorithms. AE algorithms validation: We will test the newly developed AE algorithms on 10,000 randomly selected EMRs between 2010 to 2020 from Calgary, Alberta. Trained reviewers will review the selected 10,000 EMR charts to identify AEs that had occurred during hospitalization. Performance indicators (e.g., sensitivity, specificity, positive predictive value, negative predictive value, F(1) score, etc.) of the developed AE algorithms will be assessed using chart review data as the reference standard. DISCUSSION: The results of this project can be widely implemented in EMR based healthcare system to accurately and timely detect in-hospital AEs. Public Library of Science 2022-10-05 /pmc/articles/PMC9534418/ /pubmed/36197944 http://dx.doi.org/10.1371/journal.pone.0275250 Text en © 2022 Wu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Study Protocol Wu, Guosong Eastwood, Cathy Zeng, Yong Quan, Hude Long, Quan Zhang, Zilong Ghali, William A. Bakal, Jeffrey Boussat, Bastien Flemons, Ward Forster, Alan Southern, Danielle A. Knudsen, Søren Popowich, Brittany Xu, Yuan Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title | Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title_full | Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title_fullStr | Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title_full_unstemmed | Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title_short | Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol |
title_sort | developing emr-based algorithms to identify hospital adverse events for health system performance evaluation and improvement: study protocol |
topic | Study Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534418/ https://www.ncbi.nlm.nih.gov/pubmed/36197944 http://dx.doi.org/10.1371/journal.pone.0275250 |
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