Cargando…

Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol

BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely im...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Guosong, Eastwood, Cathy, Zeng, Yong, Quan, Hude, Long, Quan, Zhang, Zilong, Ghali, William A., Bakal, Jeffrey, Boussat, Bastien, Flemons, Ward, Forster, Alan, Southern, Danielle A., Knudsen, Søren, Popowich, Brittany, Xu, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534418/
https://www.ncbi.nlm.nih.gov/pubmed/36197944
http://dx.doi.org/10.1371/journal.pone.0275250
_version_ 1784802536726724608
author Wu, Guosong
Eastwood, Cathy
Zeng, Yong
Quan, Hude
Long, Quan
Zhang, Zilong
Ghali, William A.
Bakal, Jeffrey
Boussat, Bastien
Flemons, Ward
Forster, Alan
Southern, Danielle A.
Knudsen, Søren
Popowich, Brittany
Xu, Yuan
author_facet Wu, Guosong
Eastwood, Cathy
Zeng, Yong
Quan, Hude
Long, Quan
Zhang, Zilong
Ghali, William A.
Bakal, Jeffrey
Boussat, Bastien
Flemons, Ward
Forster, Alan
Southern, Danielle A.
Knudsen, Søren
Popowich, Brittany
Xu, Yuan
author_sort Wu, Guosong
collection PubMed
description BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely implemented and contain detailed and comprehensive information regarding all aspects of patient care, offering a valuable complement to administrative data. Harnessing the rich clinical data in EMRs offers a unique opportunity to improve detection, identify possible risk factors of AE and enhance surveillance. However, the methodological tools for detection of AEs within EMR need to be developed and validated. The objectives of this study are to develop EMR-based AE algorithms from hospital EMR data and assess AE algorithm’s validity in Canadian EMR data. METHODS: Patient EMR structured and text data from acute care hospitals in Calgary, Alberta, Canada will be linked with discharge abstract data (DAD) between 2010 and 2020 (n~1.5 million). AE algorithms development. First, a comprehensive list of AEs will be generated through a systematic literature review and expert recommendations. Second, these AEs will be mapped to EMR free texts using Natural Language Processing (NLP) technologies. Finally, an expert panel will assess the clinical relevance of the developed NLP algorithms. AE algorithms validation: We will test the newly developed AE algorithms on 10,000 randomly selected EMRs between 2010 to 2020 from Calgary, Alberta. Trained reviewers will review the selected 10,000 EMR charts to identify AEs that had occurred during hospitalization. Performance indicators (e.g., sensitivity, specificity, positive predictive value, negative predictive value, F(1) score, etc.) of the developed AE algorithms will be assessed using chart review data as the reference standard. DISCUSSION: The results of this project can be widely implemented in EMR based healthcare system to accurately and timely detect in-hospital AEs.
format Online
Article
Text
id pubmed-9534418
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-95344182022-10-06 Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol Wu, Guosong Eastwood, Cathy Zeng, Yong Quan, Hude Long, Quan Zhang, Zilong Ghali, William A. Bakal, Jeffrey Boussat, Bastien Flemons, Ward Forster, Alan Southern, Danielle A. Knudsen, Søren Popowich, Brittany Xu, Yuan PLoS One Study Protocol BACKGROUND: Measurement of care quality and safety mainly relies on abstracted administrative data. However, it is well studied that administrative data-based adverse event (AE) detection methods are suboptimal due to lack of clinical information. Electronic medical records (EMR) have been widely implemented and contain detailed and comprehensive information regarding all aspects of patient care, offering a valuable complement to administrative data. Harnessing the rich clinical data in EMRs offers a unique opportunity to improve detection, identify possible risk factors of AE and enhance surveillance. However, the methodological tools for detection of AEs within EMR need to be developed and validated. The objectives of this study are to develop EMR-based AE algorithms from hospital EMR data and assess AE algorithm’s validity in Canadian EMR data. METHODS: Patient EMR structured and text data from acute care hospitals in Calgary, Alberta, Canada will be linked with discharge abstract data (DAD) between 2010 and 2020 (n~1.5 million). AE algorithms development. First, a comprehensive list of AEs will be generated through a systematic literature review and expert recommendations. Second, these AEs will be mapped to EMR free texts using Natural Language Processing (NLP) technologies. Finally, an expert panel will assess the clinical relevance of the developed NLP algorithms. AE algorithms validation: We will test the newly developed AE algorithms on 10,000 randomly selected EMRs between 2010 to 2020 from Calgary, Alberta. Trained reviewers will review the selected 10,000 EMR charts to identify AEs that had occurred during hospitalization. Performance indicators (e.g., sensitivity, specificity, positive predictive value, negative predictive value, F(1) score, etc.) of the developed AE algorithms will be assessed using chart review data as the reference standard. DISCUSSION: The results of this project can be widely implemented in EMR based healthcare system to accurately and timely detect in-hospital AEs. Public Library of Science 2022-10-05 /pmc/articles/PMC9534418/ /pubmed/36197944 http://dx.doi.org/10.1371/journal.pone.0275250 Text en © 2022 Wu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Study Protocol
Wu, Guosong
Eastwood, Cathy
Zeng, Yong
Quan, Hude
Long, Quan
Zhang, Zilong
Ghali, William A.
Bakal, Jeffrey
Boussat, Bastien
Flemons, Ward
Forster, Alan
Southern, Danielle A.
Knudsen, Søren
Popowich, Brittany
Xu, Yuan
Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title_full Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title_fullStr Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title_full_unstemmed Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title_short Developing EMR-based algorithms to Identify hospital adverse events for health system performance evaluation and improvement: Study protocol
title_sort developing emr-based algorithms to identify hospital adverse events for health system performance evaluation and improvement: study protocol
topic Study Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534418/
https://www.ncbi.nlm.nih.gov/pubmed/36197944
http://dx.doi.org/10.1371/journal.pone.0275250
work_keys_str_mv AT wuguosong developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT eastwoodcathy developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT zengyong developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT quanhude developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT longquan developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT zhangzilong developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT ghaliwilliama developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT bakaljeffrey developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT boussatbastien developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT flemonsward developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT forsteralan developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT southerndaniellea developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT knudsensøren developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT popowichbrittany developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol
AT xuyuan developingemrbasedalgorithmstoidentifyhospitaladverseeventsforhealthsystemperformanceevaluationandimprovementstudyprotocol