Cargando…
UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection
The COVID-19 (Coronavirus disease 2019) pandemic has become a major global threat to human health and well-being. Thus, the development of computer-aided detection (CAD) systems that are capable of accurately distinguishing COVID-19 from other diseases using chest computed tomography (CT) and X-ray...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534540/ https://www.ncbi.nlm.nih.gov/pubmed/36217534 http://dx.doi.org/10.1016/j.inffus.2022.09.023 |
_version_ | 1784802565122162688 |
---|---|
author | Abdar, Moloud Salari, Soorena Qahremani, Sina Lam, Hak-Keung Karray, Fakhri Hussain, Sadiq Khosravi, Abbas Acharya, U. Rajendra Makarenkov, Vladimir Nahavandi, Saeid |
author_facet | Abdar, Moloud Salari, Soorena Qahremani, Sina Lam, Hak-Keung Karray, Fakhri Hussain, Sadiq Khosravi, Abbas Acharya, U. Rajendra Makarenkov, Vladimir Nahavandi, Saeid |
author_sort | Abdar, Moloud |
collection | PubMed |
description | The COVID-19 (Coronavirus disease 2019) pandemic has become a major global threat to human health and well-being. Thus, the development of computer-aided detection (CAD) systems that are capable of accurately distinguishing COVID-19 from other diseases using chest computed tomography (CT) and X-ray data is of immediate priority. Such automatic systems are usually based on traditional machine learning or deep learning methods. Differently from most of the existing studies, which used either CT scan or X-ray images in COVID-19-case classification, we present a new, simple but efficient deep learning feature fusion model, called [Formula: see text] , which is able to classify accurately large datasets of both of these types of images. We argue that the uncertainty of the model’s predictions should be taken into account in the learning process, even though most of the existing studies have overlooked it. We quantify the prediction uncertainty in our feature fusion model using effective Ensemble Monte Carlo Dropout (EMCD) technique. A comprehensive simulation study has been conducted to compare the results of our new model to the existing approaches, evaluating the performance of competing models in terms of Precision, Recall, F-Measure, Accuracy and ROC curves. The obtained results prove the efficiency of our model which provided the prediction accuracy of 99.08% and 96.35% for the considered CT scan and X-ray datasets, respectively. Moreover, our [Formula: see text] model was generally robust to noise and performed well with previously unseen data. The source code of our implementation is freely available at: https://github.com/moloud1987/UncertaintyFuseNet-for-COVID-19-Classification. |
format | Online Article Text |
id | pubmed-9534540 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95345402022-10-06 UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection Abdar, Moloud Salari, Soorena Qahremani, Sina Lam, Hak-Keung Karray, Fakhri Hussain, Sadiq Khosravi, Abbas Acharya, U. Rajendra Makarenkov, Vladimir Nahavandi, Saeid Inf Fusion Full Length Article The COVID-19 (Coronavirus disease 2019) pandemic has become a major global threat to human health and well-being. Thus, the development of computer-aided detection (CAD) systems that are capable of accurately distinguishing COVID-19 from other diseases using chest computed tomography (CT) and X-ray data is of immediate priority. Such automatic systems are usually based on traditional machine learning or deep learning methods. Differently from most of the existing studies, which used either CT scan or X-ray images in COVID-19-case classification, we present a new, simple but efficient deep learning feature fusion model, called [Formula: see text] , which is able to classify accurately large datasets of both of these types of images. We argue that the uncertainty of the model’s predictions should be taken into account in the learning process, even though most of the existing studies have overlooked it. We quantify the prediction uncertainty in our feature fusion model using effective Ensemble Monte Carlo Dropout (EMCD) technique. A comprehensive simulation study has been conducted to compare the results of our new model to the existing approaches, evaluating the performance of competing models in terms of Precision, Recall, F-Measure, Accuracy and ROC curves. The obtained results prove the efficiency of our model which provided the prediction accuracy of 99.08% and 96.35% for the considered CT scan and X-ray datasets, respectively. Moreover, our [Formula: see text] model was generally robust to noise and performed well with previously unseen data. The source code of our implementation is freely available at: https://github.com/moloud1987/UncertaintyFuseNet-for-COVID-19-Classification. Elsevier B.V. 2023-02 2022-10-05 /pmc/articles/PMC9534540/ /pubmed/36217534 http://dx.doi.org/10.1016/j.inffus.2022.09.023 Text en © 2022 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Full Length Article Abdar, Moloud Salari, Soorena Qahremani, Sina Lam, Hak-Keung Karray, Fakhri Hussain, Sadiq Khosravi, Abbas Acharya, U. Rajendra Makarenkov, Vladimir Nahavandi, Saeid UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title | UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title_full | UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title_fullStr | UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title_full_unstemmed | UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title_short | UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection |
title_sort | uncertaintyfusenet: robust uncertainty-aware hierarchical feature fusion model with ensemble monte carlo dropout for covid-19 detection |
topic | Full Length Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9534540/ https://www.ncbi.nlm.nih.gov/pubmed/36217534 http://dx.doi.org/10.1016/j.inffus.2022.09.023 |
work_keys_str_mv | AT abdarmoloud uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT salarisoorena uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT qahremanisina uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT lamhakkeung uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT karrayfakhri uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT hussainsadiq uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT khosraviabbas uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT acharyaurajendra uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT makarenkovvladimir uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection AT nahavandisaeid uncertaintyfusenetrobustuncertaintyawarehierarchicalfeaturefusionmodelwithensemblemontecarlodropoutforcovid19detection |