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Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer

Pyroptosis, a form of inflammatory programmed cell death, is accompanied by inflammation and participate in the body's immune response. The expression of pyroptosis-related genes (PRGs) is associated with tumor prognosis in ovarian cancer (OC), but it is still unknown whether pyroptosis can aff...

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Autores principales: Liu, Jinhui, Chen, Can, Geng, Rui, Shao, Fang, Yang, Sheng, Zhong, Zihang, Ni, Senmiao, Bai, Jianling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9535418/
https://www.ncbi.nlm.nih.gov/pubmed/36249562
http://dx.doi.org/10.1016/j.csbj.2022.09.037
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author Liu, Jinhui
Chen, Can
Geng, Rui
Shao, Fang
Yang, Sheng
Zhong, Zihang
Ni, Senmiao
Bai, Jianling
author_facet Liu, Jinhui
Chen, Can
Geng, Rui
Shao, Fang
Yang, Sheng
Zhong, Zihang
Ni, Senmiao
Bai, Jianling
author_sort Liu, Jinhui
collection PubMed
description Pyroptosis, a form of inflammatory programmed cell death, is accompanied by inflammation and participate in the body's immune response. The expression of pyroptosis-related genes (PRGs) is associated with tumor prognosis in ovarian cancer (OC), but it is still unknown whether pyroptosis can affect tumor immune microenvironment (TME) of OC. Based on 30 PRGs, we comprehensively assessed the pyroptosis patterns by using PRGscore and correlated them with TME features in 474 OC patients. Finally, we identified three pyroptosis modification patterns and TME immune characteristics of these patterns were in response to three immune phenotypes (immune-desert, immune-inflamed, and immune-excluded phenotypes). PRGscore can predict patient survival, staging, grading, and immunotherapy efficacy. Low PRGscore was associated with better survival advantage and increased mutation burden. Low PRGscore patients showed significantly better therapeutic effects and clinical results in chemotherapy and immunotherapy. Besides, the capability of PRGscore in predicting prognosis and immunotherapy sensitivity was further verified in other three tumor cohorts. In conclusion, the comprehensive assessment of OC pyroptosis modifications can help enhancing our understanding of TME immune infiltration and provide better personalized treatment tactics for OC patients.
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spelling pubmed-95354182022-10-14 Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer Liu, Jinhui Chen, Can Geng, Rui Shao, Fang Yang, Sheng Zhong, Zihang Ni, Senmiao Bai, Jianling Comput Struct Biotechnol J Research Article Pyroptosis, a form of inflammatory programmed cell death, is accompanied by inflammation and participate in the body's immune response. The expression of pyroptosis-related genes (PRGs) is associated with tumor prognosis in ovarian cancer (OC), but it is still unknown whether pyroptosis can affect tumor immune microenvironment (TME) of OC. Based on 30 PRGs, we comprehensively assessed the pyroptosis patterns by using PRGscore and correlated them with TME features in 474 OC patients. Finally, we identified three pyroptosis modification patterns and TME immune characteristics of these patterns were in response to three immune phenotypes (immune-desert, immune-inflamed, and immune-excluded phenotypes). PRGscore can predict patient survival, staging, grading, and immunotherapy efficacy. Low PRGscore was associated with better survival advantage and increased mutation burden. Low PRGscore patients showed significantly better therapeutic effects and clinical results in chemotherapy and immunotherapy. Besides, the capability of PRGscore in predicting prognosis and immunotherapy sensitivity was further verified in other three tumor cohorts. In conclusion, the comprehensive assessment of OC pyroptosis modifications can help enhancing our understanding of TME immune infiltration and provide better personalized treatment tactics for OC patients. Research Network of Computational and Structural Biotechnology 2022-09-28 /pmc/articles/PMC9535418/ /pubmed/36249562 http://dx.doi.org/10.1016/j.csbj.2022.09.037 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Liu, Jinhui
Chen, Can
Geng, Rui
Shao, Fang
Yang, Sheng
Zhong, Zihang
Ni, Senmiao
Bai, Jianling
Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title_full Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title_fullStr Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title_full_unstemmed Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title_short Pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
title_sort pyroptosis-related gene expression patterns and corresponding tumor microenvironment infiltration characterization in ovarian cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9535418/
https://www.ncbi.nlm.nih.gov/pubmed/36249562
http://dx.doi.org/10.1016/j.csbj.2022.09.037
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