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Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method

PURPOSE: Magnetic resonance imaging (MRI) has a special place in the evaluation of orbital and periorbital lesions. Segmentation is one of the deep learning methods. In this study, we aimed to perform segmentation in orbital and periorbital lesions. MATERIAL AND METHODS: Contrast-enhanced orbital MR...

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Autores principales: Aydin, Nevin, Saylisoy, Suzan, Celik, Ozer, Aslan, Ahmet Faruk, Odabas, Alper
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Termedia Publishing House 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9536204/
https://www.ncbi.nlm.nih.gov/pubmed/36250137
http://dx.doi.org/10.5114/pjr.2022.119808
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author Aydin, Nevin
Saylisoy, Suzan
Celik, Ozer
Aslan, Ahmet Faruk
Odabas, Alper
author_facet Aydin, Nevin
Saylisoy, Suzan
Celik, Ozer
Aslan, Ahmet Faruk
Odabas, Alper
author_sort Aydin, Nevin
collection PubMed
description PURPOSE: Magnetic resonance imaging (MRI) has a special place in the evaluation of orbital and periorbital lesions. Segmentation is one of the deep learning methods. In this study, we aimed to perform segmentation in orbital and periorbital lesions. MATERIAL AND METHODS: Contrast-enhanced orbital MRIs performed between 2010 and 2019 were retrospectively screened, and 302 cross-sections of contrast-enhanced, fat-suppressed, T1-weighted, axial MRI images of 95 patients obtained using 3 T and 1.5 T devices were included in the study. The dataset was divided into 3: training, test, and validation. The number of training and validation data was increased 4 times by applying data augmentation (horizontal, vertical, and both). Pytorch UNet was used for training, with 100 epochs. The intersection over union (IOU) statistic (the Jaccard index) was selected as 50%, and the results were calculated. RESULTS: The 77(th) epoch model provided the best results: true positives, 23; false positives, 4; and false negatives, 8. The pre-cision, sensitivity, and F1 score were determined as 0.85, 0.74, and 0.79, respectively. CONCLUSIONS: Our study proved to be successful in segmentation by deep learning method. It is one of the pioneering studies on this subject and will shed light on further segmentation studies to be performed in orbital MR images.
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spelling pubmed-95362042022-10-14 Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method Aydin, Nevin Saylisoy, Suzan Celik, Ozer Aslan, Ahmet Faruk Odabas, Alper Pol J Radiol Original Paper PURPOSE: Magnetic resonance imaging (MRI) has a special place in the evaluation of orbital and periorbital lesions. Segmentation is one of the deep learning methods. In this study, we aimed to perform segmentation in orbital and periorbital lesions. MATERIAL AND METHODS: Contrast-enhanced orbital MRIs performed between 2010 and 2019 were retrospectively screened, and 302 cross-sections of contrast-enhanced, fat-suppressed, T1-weighted, axial MRI images of 95 patients obtained using 3 T and 1.5 T devices were included in the study. The dataset was divided into 3: training, test, and validation. The number of training and validation data was increased 4 times by applying data augmentation (horizontal, vertical, and both). Pytorch UNet was used for training, with 100 epochs. The intersection over union (IOU) statistic (the Jaccard index) was selected as 50%, and the results were calculated. RESULTS: The 77(th) epoch model provided the best results: true positives, 23; false positives, 4; and false negatives, 8. The pre-cision, sensitivity, and F1 score were determined as 0.85, 0.74, and 0.79, respectively. CONCLUSIONS: Our study proved to be successful in segmentation by deep learning method. It is one of the pioneering studies on this subject and will shed light on further segmentation studies to be performed in orbital MR images. Termedia Publishing House 2022-09-19 /pmc/articles/PMC9536204/ /pubmed/36250137 http://dx.doi.org/10.5114/pjr.2022.119808 Text en © Pol J Radiol 2022 https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-Noncommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0). License (https://creativecommons.org/licenses/by-nc-nd/4.0/)
spellingShingle Original Paper
Aydin, Nevin
Saylisoy, Suzan
Celik, Ozer
Aslan, Ahmet Faruk
Odabas, Alper
Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title_full Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title_fullStr Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title_full_unstemmed Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title_short Segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
title_sort segmentation of orbital and periorbital lesions detected in orbital magnetic resonance imaging by deep learning method
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9536204/
https://www.ncbi.nlm.nih.gov/pubmed/36250137
http://dx.doi.org/10.5114/pjr.2022.119808
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