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A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis
BACKGROUND: Ubiquitin-specific protease15(USP15), is the 16th identified protease in the USP family and is a key protein in tumorigenesis. However, the predictive value and regulatory mechanism of USP15 in breast cancer are unclear. METHODS: The GEPIA, UALCAN, GeneMANIA, and STRING databases were ap...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9536986/ https://www.ncbi.nlm.nih.gov/pubmed/36213818 http://dx.doi.org/10.1155/2022/1427726 |
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author | Ling, Jun Qin, Chenhui Li, Tao Wang, Baozhen Cai, Weiji Ma, Lei Wang, Yanfeng Chen, Jing Xu, Fang |
author_facet | Ling, Jun Qin, Chenhui Li, Tao Wang, Baozhen Cai, Weiji Ma, Lei Wang, Yanfeng Chen, Jing Xu, Fang |
author_sort | Ling, Jun |
collection | PubMed |
description | BACKGROUND: Ubiquitin-specific protease15(USP15), is the 16th identified protease in the USP family and is a key protein in tumorigenesis. However, the predictive value and regulatory mechanism of USP15 in breast cancer are unclear. METHODS: The GEPIA, UALCAN, GeneMANIA, and STRING databases were applied to explore the expression of USP15 in breast cancer and associated proteins. In addition, the TIMER database was evaluated for immune infiltration patterns. Moreover, protein immunoblotting assay, cell scratching assay, small compartment invasion assay, 3D stromal gel assay, immunoprecipitation assay, and immunohistochemistry (IHC) were used to USP15 regulatory mechanisms in breast cancer. RESULTS: In BRCA, several databases, including GEPIA and UALCAN, describe the upregulation of total protein levels and USP15 phosphorylation. In addition, the expression of USP15 was significantly correlated with gender and clinical stage. Overall survival (OS) was lower in patients with high USP15 expression. Functional network analysis showed that USP15 is involved in tumor-associated pathways, DNA replication, and cell cycle signaling through TGFβRI. In addition, USP15 expression was positively correlated with immune infiltration, including immune score, mesenchymal score, and several tumor-infiltrating lymphocytes (TIL). In addition, IHC results further confirmed the high expression of USP15 in breast cancer and its prognostic potential. CONCLUSIONS: These findings demonstrate that high USP15 expression indicates poor prognosis in BRCA and reveal potential regulatory networks and the positive relationship with immune infiltration. Thus, USP15 may be an attractive predictor for BRCA. |
format | Online Article Text |
id | pubmed-9536986 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-95369862022-10-07 A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis Ling, Jun Qin, Chenhui Li, Tao Wang, Baozhen Cai, Weiji Ma, Lei Wang, Yanfeng Chen, Jing Xu, Fang J Oncol Research Article BACKGROUND: Ubiquitin-specific protease15(USP15), is the 16th identified protease in the USP family and is a key protein in tumorigenesis. However, the predictive value and regulatory mechanism of USP15 in breast cancer are unclear. METHODS: The GEPIA, UALCAN, GeneMANIA, and STRING databases were applied to explore the expression of USP15 in breast cancer and associated proteins. In addition, the TIMER database was evaluated for immune infiltration patterns. Moreover, protein immunoblotting assay, cell scratching assay, small compartment invasion assay, 3D stromal gel assay, immunoprecipitation assay, and immunohistochemistry (IHC) were used to USP15 regulatory mechanisms in breast cancer. RESULTS: In BRCA, several databases, including GEPIA and UALCAN, describe the upregulation of total protein levels and USP15 phosphorylation. In addition, the expression of USP15 was significantly correlated with gender and clinical stage. Overall survival (OS) was lower in patients with high USP15 expression. Functional network analysis showed that USP15 is involved in tumor-associated pathways, DNA replication, and cell cycle signaling through TGFβRI. In addition, USP15 expression was positively correlated with immune infiltration, including immune score, mesenchymal score, and several tumor-infiltrating lymphocytes (TIL). In addition, IHC results further confirmed the high expression of USP15 in breast cancer and its prognostic potential. CONCLUSIONS: These findings demonstrate that high USP15 expression indicates poor prognosis in BRCA and reveal potential regulatory networks and the positive relationship with immune infiltration. Thus, USP15 may be an attractive predictor for BRCA. Hindawi 2022-09-29 /pmc/articles/PMC9536986/ /pubmed/36213818 http://dx.doi.org/10.1155/2022/1427726 Text en Copyright © 2022 Jun Ling et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Ling, Jun Qin, Chenhui Li, Tao Wang, Baozhen Cai, Weiji Ma, Lei Wang, Yanfeng Chen, Jing Xu, Fang A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title | A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title_full | A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title_fullStr | A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title_full_unstemmed | A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title_short | A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis |
title_sort | regulatory network analysis of the importance of usp15 in breast cancer metastasis and prognosis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9536986/ https://www.ncbi.nlm.nih.gov/pubmed/36213818 http://dx.doi.org/10.1155/2022/1427726 |
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