Cargando…

Prediction of chemical warfare agents based on cholinergic array type meta-predictors

Molecular insights into chemical safety are very important for sustainable development as well as risk assessment. This study considers how to manage future upcoming harmful agents, especially potentially cholinergic chemical warfare agents (CWAs). For this purpose, the structures of known cholinerg...

Descripción completa

Detalles Bibliográficos
Autores principales: Kumar, Surendra, Kumari, Chandni, Ahn, Sangjin, Kim, Hyoungrae, Kim, Mi-hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537167/
https://www.ncbi.nlm.nih.gov/pubmed/36203081
http://dx.doi.org/10.1038/s41598-022-21150-2
_version_ 1784803139496443904
author Kumar, Surendra
Kumari, Chandni
Ahn, Sangjin
Kim, Hyoungrae
Kim, Mi-hyun
author_facet Kumar, Surendra
Kumari, Chandni
Ahn, Sangjin
Kim, Hyoungrae
Kim, Mi-hyun
author_sort Kumar, Surendra
collection PubMed
description Molecular insights into chemical safety are very important for sustainable development as well as risk assessment. This study considers how to manage future upcoming harmful agents, especially potentially cholinergic chemical warfare agents (CWAs). For this purpose, the structures of known cholinergic agents were encoded by molecular descriptors. And then each drug target interaction (DTI) was learned from the encoded structures and their cholinergic activities to build DTI classification models for five cholinergic targets with reliable statistical validation (ensemble-AUC: up to 0.790, MCC: up to 0.991, accuracy: up to 0.995). The collected classifiers were transformed into 2D or 3D array type meta-predictors for multi-task: (1) cholinergic prediction and (2) CWA detection. The detection ability of the array classifiers was verified under the imbalanced dataset between CWAs and none CWAs (area under the precision-recall curve: up to 0.997, MCC: up to 0.638, F1-score of none CWAs: up to 0.991, F1-score of CWAs: up to 0.585).
format Online
Article
Text
id pubmed-9537167
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-95371672022-10-08 Prediction of chemical warfare agents based on cholinergic array type meta-predictors Kumar, Surendra Kumari, Chandni Ahn, Sangjin Kim, Hyoungrae Kim, Mi-hyun Sci Rep Article Molecular insights into chemical safety are very important for sustainable development as well as risk assessment. This study considers how to manage future upcoming harmful agents, especially potentially cholinergic chemical warfare agents (CWAs). For this purpose, the structures of known cholinergic agents were encoded by molecular descriptors. And then each drug target interaction (DTI) was learned from the encoded structures and their cholinergic activities to build DTI classification models for five cholinergic targets with reliable statistical validation (ensemble-AUC: up to 0.790, MCC: up to 0.991, accuracy: up to 0.995). The collected classifiers were transformed into 2D or 3D array type meta-predictors for multi-task: (1) cholinergic prediction and (2) CWA detection. The detection ability of the array classifiers was verified under the imbalanced dataset between CWAs and none CWAs (area under the precision-recall curve: up to 0.997, MCC: up to 0.638, F1-score of none CWAs: up to 0.991, F1-score of CWAs: up to 0.585). Nature Publishing Group UK 2022-10-06 /pmc/articles/PMC9537167/ /pubmed/36203081 http://dx.doi.org/10.1038/s41598-022-21150-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kumar, Surendra
Kumari, Chandni
Ahn, Sangjin
Kim, Hyoungrae
Kim, Mi-hyun
Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title_full Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title_fullStr Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title_full_unstemmed Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title_short Prediction of chemical warfare agents based on cholinergic array type meta-predictors
title_sort prediction of chemical warfare agents based on cholinergic array type meta-predictors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537167/
https://www.ncbi.nlm.nih.gov/pubmed/36203081
http://dx.doi.org/10.1038/s41598-022-21150-2
work_keys_str_mv AT kumarsurendra predictionofchemicalwarfareagentsbasedoncholinergicarraytypemetapredictors
AT kumarichandni predictionofchemicalwarfareagentsbasedoncholinergicarraytypemetapredictors
AT ahnsangjin predictionofchemicalwarfareagentsbasedoncholinergicarraytypemetapredictors
AT kimhyoungrae predictionofchemicalwarfareagentsbasedoncholinergicarraytypemetapredictors
AT kimmihyun predictionofchemicalwarfareagentsbasedoncholinergicarraytypemetapredictors