Cargando…

Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)

The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves...

Descripción completa

Detalles Bibliográficos
Autores principales: Torres-Espín, Abel, Almeida, Carlos A., Chou, Austin, Huie, J. Russell, Chiu, Michael, Vavrek, Romana, Sacramento, Jeff, Orr, Michael B., Gensel, John C., Grethe, Jeffery S., Martone, Maryann E., Fouad, Karim, Ferguson, Adam R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537193/
https://www.ncbi.nlm.nih.gov/pubmed/34347243
http://dx.doi.org/10.1007/s12021-021-09533-8
_version_ 1784803145795239936
author Torres-Espín, Abel
Almeida, Carlos A.
Chou, Austin
Huie, J. Russell
Chiu, Michael
Vavrek, Romana
Sacramento, Jeff
Orr, Michael B.
Gensel, John C.
Grethe, Jeffery S.
Martone, Maryann E.
Fouad, Karim
Ferguson, Adam R.
author_facet Torres-Espín, Abel
Almeida, Carlos A.
Chou, Austin
Huie, J. Russell
Chiu, Michael
Vavrek, Romana
Sacramento, Jeff
Orr, Michael B.
Gensel, John C.
Grethe, Jeffery S.
Martone, Maryann E.
Fouad, Karim
Ferguson, Adam R.
author_sort Torres-Espín, Abel
collection PubMed
description The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a ‘data dump’ that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on ‘long-tail’ preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.
format Online
Article
Text
id pubmed-9537193
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-95371932022-10-08 Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org) Torres-Espín, Abel Almeida, Carlos A. Chou, Austin Huie, J. Russell Chiu, Michael Vavrek, Romana Sacramento, Jeff Orr, Michael B. Gensel, John C. Grethe, Jeffery S. Martone, Maryann E. Fouad, Karim Ferguson, Adam R. Neuroinformatics Original Article The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a ‘data dump’ that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on ‘long-tail’ preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields. Springer US 2021-08-04 2022 /pmc/articles/PMC9537193/ /pubmed/34347243 http://dx.doi.org/10.1007/s12021-021-09533-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Torres-Espín, Abel
Almeida, Carlos A.
Chou, Austin
Huie, J. Russell
Chiu, Michael
Vavrek, Romana
Sacramento, Jeff
Orr, Michael B.
Gensel, John C.
Grethe, Jeffery S.
Martone, Maryann E.
Fouad, Karim
Ferguson, Adam R.
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title_full Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title_fullStr Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title_full_unstemmed Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title_short Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
title_sort promoting fair data through community-driven agile design: the open data commons for spinal cord injury (odc-sci.org)
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537193/
https://www.ncbi.nlm.nih.gov/pubmed/34347243
http://dx.doi.org/10.1007/s12021-021-09533-8
work_keys_str_mv AT torresespinabel promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT almeidacarlosa promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT chouaustin promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT huiejrussell promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT chiumichael promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT vavrekromana promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT sacramentojeff promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT orrmichaelb promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT genseljohnc promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT grethejefferys promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT martonemaryanne promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT fouadkarim promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT fergusonadamr promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg
AT promotingfairdatathroughcommunitydrivenagiledesigntheopendatacommonsforspinalcordinjuryodcsciorg