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The C-BIG Repository: an Institution-Level Open Science Platform
In January 2016, the Montreal Neurological Institute-Hospital (The Neuro) declared itself an Open Science organization. This vision extends beyond efforts by individual scientists seeking to release individual datasets, software tools, or building platforms that provide for the free dissemination of...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537233/ https://www.ncbi.nlm.nih.gov/pubmed/34003431 http://dx.doi.org/10.1007/s12021-021-09516-9 |
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author | Das, Samir Abou-Haidar, Rida Rabalais, Henri Sun, Sonia Denise Lai Wing Rosli, Zaliqa Chatpar, Krishna Boivin, Marie-Noëlle Tabatabaei, Mahdieh Rogers, Christine Legault, Melanie Lo, Derek Degroot, Clotilde Dagher, Alain Dyke, Stephanie O. M. Durcan, Thomas M. Seyller, Annabel Doyon, Julien Poupon, Viviane Fon, Edward A. Genge, Angela Rouleau, Guy A. Karamchandani, Jason Evans, Alan C. |
author_facet | Das, Samir Abou-Haidar, Rida Rabalais, Henri Sun, Sonia Denise Lai Wing Rosli, Zaliqa Chatpar, Krishna Boivin, Marie-Noëlle Tabatabaei, Mahdieh Rogers, Christine Legault, Melanie Lo, Derek Degroot, Clotilde Dagher, Alain Dyke, Stephanie O. M. Durcan, Thomas M. Seyller, Annabel Doyon, Julien Poupon, Viviane Fon, Edward A. Genge, Angela Rouleau, Guy A. Karamchandani, Jason Evans, Alan C. |
author_sort | Das, Samir |
collection | PubMed |
description | In January 2016, the Montreal Neurological Institute-Hospital (The Neuro) declared itself an Open Science organization. This vision extends beyond efforts by individual scientists seeking to release individual datasets, software tools, or building platforms that provide for the free dissemination of such information. It involves multiple stakeholders and an infrastructure that considers governance, ethics, computational resourcing, physical design, workflows, training, education, and intra-institutional reporting structures. The C-BIG repository was built in response as The Neuro’s institutional biospecimen and clinical data repository, and collects biospecimens as well as clinical, imaging, and genetic data from patients with neurological disease and healthy controls. It is aimed at helping scientific investigators, in both academia and industry, advance our understanding of neurological diseases and accelerate the development of treatments. As many neurological diseases are quite rare, they present several challenges to researchers due to their small patient populations. Overcoming these challenges required the aggregation of datasets from various projects and locations. The C-BIG repository achieves this goal and stands as a scalable working model for institutions to collect, track, curate, archive, and disseminate multimodal data from patients. In November 2020, a Registered Access layer was made available to the wider research community at https://cbigr-open.loris.ca, and in May 2021 fully open data will be released to complement the Registered Access data. This article outlines many of the aspects of The Neuro’s transition to Open Science by describing the data to be released, C-BIG’s full capabilities, and the design aspects that were implemented for effective data sharing. |
format | Online Article Text |
id | pubmed-9537233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-95372332022-10-08 The C-BIG Repository: an Institution-Level Open Science Platform Das, Samir Abou-Haidar, Rida Rabalais, Henri Sun, Sonia Denise Lai Wing Rosli, Zaliqa Chatpar, Krishna Boivin, Marie-Noëlle Tabatabaei, Mahdieh Rogers, Christine Legault, Melanie Lo, Derek Degroot, Clotilde Dagher, Alain Dyke, Stephanie O. M. Durcan, Thomas M. Seyller, Annabel Doyon, Julien Poupon, Viviane Fon, Edward A. Genge, Angela Rouleau, Guy A. Karamchandani, Jason Evans, Alan C. Neuroinformatics Original Article In January 2016, the Montreal Neurological Institute-Hospital (The Neuro) declared itself an Open Science organization. This vision extends beyond efforts by individual scientists seeking to release individual datasets, software tools, or building platforms that provide for the free dissemination of such information. It involves multiple stakeholders and an infrastructure that considers governance, ethics, computational resourcing, physical design, workflows, training, education, and intra-institutional reporting structures. The C-BIG repository was built in response as The Neuro’s institutional biospecimen and clinical data repository, and collects biospecimens as well as clinical, imaging, and genetic data from patients with neurological disease and healthy controls. It is aimed at helping scientific investigators, in both academia and industry, advance our understanding of neurological diseases and accelerate the development of treatments. As many neurological diseases are quite rare, they present several challenges to researchers due to their small patient populations. Overcoming these challenges required the aggregation of datasets from various projects and locations. The C-BIG repository achieves this goal and stands as a scalable working model for institutions to collect, track, curate, archive, and disseminate multimodal data from patients. In November 2020, a Registered Access layer was made available to the wider research community at https://cbigr-open.loris.ca, and in May 2021 fully open data will be released to complement the Registered Access data. This article outlines many of the aspects of The Neuro’s transition to Open Science by describing the data to be released, C-BIG’s full capabilities, and the design aspects that were implemented for effective data sharing. Springer US 2021-05-18 2022 /pmc/articles/PMC9537233/ /pubmed/34003431 http://dx.doi.org/10.1007/s12021-021-09516-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Das, Samir Abou-Haidar, Rida Rabalais, Henri Sun, Sonia Denise Lai Wing Rosli, Zaliqa Chatpar, Krishna Boivin, Marie-Noëlle Tabatabaei, Mahdieh Rogers, Christine Legault, Melanie Lo, Derek Degroot, Clotilde Dagher, Alain Dyke, Stephanie O. M. Durcan, Thomas M. Seyller, Annabel Doyon, Julien Poupon, Viviane Fon, Edward A. Genge, Angela Rouleau, Guy A. Karamchandani, Jason Evans, Alan C. The C-BIG Repository: an Institution-Level Open Science Platform |
title | The C-BIG Repository: an Institution-Level Open Science Platform |
title_full | The C-BIG Repository: an Institution-Level Open Science Platform |
title_fullStr | The C-BIG Repository: an Institution-Level Open Science Platform |
title_full_unstemmed | The C-BIG Repository: an Institution-Level Open Science Platform |
title_short | The C-BIG Repository: an Institution-Level Open Science Platform |
title_sort | c-big repository: an institution-level open science platform |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9537233/ https://www.ncbi.nlm.nih.gov/pubmed/34003431 http://dx.doi.org/10.1007/s12021-021-09516-9 |
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