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Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes

Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene...

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Detalles Bibliográficos
Autores principales: Stefanucci, Luca, Frontini, Mattia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540108/
https://www.ncbi.nlm.nih.gov/pubmed/35514262
http://dx.doi.org/10.1111/jth.15754
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author Stefanucci, Luca
Frontini, Mattia
author_facet Stefanucci, Luca
Frontini, Mattia
author_sort Stefanucci, Luca
collection PubMed
description Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene expression field broadened its boundaries, from the univocal relationship between regulatory elements and genes to include genome organization, long‐range DNA interactions, and epigenetics. Next‐generation sequencing has introduced genome‐wide approaches that have greatly improved our understanding of the general principles of gene expression. However, elucidating how these apply in every single genomic locus still requires painstaking experimental work, in which several independent lines of evidence are required, and often this is helped by rare genetic variants in individuals with rare diseases. This review will focus on the non‐coding features of the genome involved in transcriptional regulation, that when altered, leads to known cases of inherited (familial) thrombotic and hemostatic phenotypes, emphasizing the role of enhancers and super‐enhancers.
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spelling pubmed-95401082022-10-14 Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes Stefanucci, Luca Frontini, Mattia J Thromb Haemost Review Articles Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene expression field broadened its boundaries, from the univocal relationship between regulatory elements and genes to include genome organization, long‐range DNA interactions, and epigenetics. Next‐generation sequencing has introduced genome‐wide approaches that have greatly improved our understanding of the general principles of gene expression. However, elucidating how these apply in every single genomic locus still requires painstaking experimental work, in which several independent lines of evidence are required, and often this is helped by rare genetic variants in individuals with rare diseases. This review will focus on the non‐coding features of the genome involved in transcriptional regulation, that when altered, leads to known cases of inherited (familial) thrombotic and hemostatic phenotypes, emphasizing the role of enhancers and super‐enhancers. John Wiley and Sons Inc. 2022-05-23 2022-08 /pmc/articles/PMC9540108/ /pubmed/35514262 http://dx.doi.org/10.1111/jth.15754 Text en © 2022 The Authors. Journal of Thrombosis and Haemostasis published by Wiley Periodicals LLC on behalf of International Society on Thrombosis and Haemostasis. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Articles
Stefanucci, Luca
Frontini, Mattia
Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title_full Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title_fullStr Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title_full_unstemmed Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title_short Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
title_sort non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540108/
https://www.ncbi.nlm.nih.gov/pubmed/35514262
http://dx.doi.org/10.1111/jth.15754
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