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Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes
Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540108/ https://www.ncbi.nlm.nih.gov/pubmed/35514262 http://dx.doi.org/10.1111/jth.15754 |
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author | Stefanucci, Luca Frontini, Mattia |
author_facet | Stefanucci, Luca Frontini, Mattia |
author_sort | Stefanucci, Luca |
collection | PubMed |
description | Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene expression field broadened its boundaries, from the univocal relationship between regulatory elements and genes to include genome organization, long‐range DNA interactions, and epigenetics. Next‐generation sequencing has introduced genome‐wide approaches that have greatly improved our understanding of the general principles of gene expression. However, elucidating how these apply in every single genomic locus still requires painstaking experimental work, in which several independent lines of evidence are required, and often this is helped by rare genetic variants in individuals with rare diseases. This review will focus on the non‐coding features of the genome involved in transcriptional regulation, that when altered, leads to known cases of inherited (familial) thrombotic and hemostatic phenotypes, emphasizing the role of enhancers and super‐enhancers. |
format | Online Article Text |
id | pubmed-9540108 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95401082022-10-14 Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes Stefanucci, Luca Frontini, Mattia J Thromb Haemost Review Articles Since the early inception of genome‐wide association studies (GWAS), it became clear that, in all diseases or traits studied, most genetic variants are likely to exert their effect on gene expression mainly by altering the function of regulatory elements. At the same time, the regulation of the gene expression field broadened its boundaries, from the univocal relationship between regulatory elements and genes to include genome organization, long‐range DNA interactions, and epigenetics. Next‐generation sequencing has introduced genome‐wide approaches that have greatly improved our understanding of the general principles of gene expression. However, elucidating how these apply in every single genomic locus still requires painstaking experimental work, in which several independent lines of evidence are required, and often this is helped by rare genetic variants in individuals with rare diseases. This review will focus on the non‐coding features of the genome involved in transcriptional regulation, that when altered, leads to known cases of inherited (familial) thrombotic and hemostatic phenotypes, emphasizing the role of enhancers and super‐enhancers. John Wiley and Sons Inc. 2022-05-23 2022-08 /pmc/articles/PMC9540108/ /pubmed/35514262 http://dx.doi.org/10.1111/jth.15754 Text en © 2022 The Authors. Journal of Thrombosis and Haemostasis published by Wiley Periodicals LLC on behalf of International Society on Thrombosis and Haemostasis. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Articles Stefanucci, Luca Frontini, Mattia Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title | Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title_full | Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title_fullStr | Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title_full_unstemmed | Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title_short | Non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
title_sort | non‐coding genetic variation in regulatory elements determines thrombosis and hemostasis phenotypes |
topic | Review Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540108/ https://www.ncbi.nlm.nih.gov/pubmed/35514262 http://dx.doi.org/10.1111/jth.15754 |
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