Cargando…

Using piecewise regression to identify biological phenomena in biotelemetry datasets

1. Technological advances in the field of animal tracking have greatly expanded the potential to remotely monitor animals, opening the door to exploring how animals shift their behaviour over time or respond to external stimuli. A wide variety of animal‐borne sensors can provide information on an an...

Descripción completa

Detalles Bibliográficos
Autores principales: Wolfson, David W., Andersen, David E., Fieberg, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540865/
https://www.ncbi.nlm.nih.gov/pubmed/35852382
http://dx.doi.org/10.1111/1365-2656.13779
_version_ 1784803798276898816
author Wolfson, David W.
Andersen, David E.
Fieberg, John R.
author_facet Wolfson, David W.
Andersen, David E.
Fieberg, John R.
author_sort Wolfson, David W.
collection PubMed
description 1. Technological advances in the field of animal tracking have greatly expanded the potential to remotely monitor animals, opening the door to exploring how animals shift their behaviour over time or respond to external stimuli. A wide variety of animal‐borne sensors can provide information on an animal's location, movement characteristics, external environmental conditions and internal physiological status. 2. Here, we demonstrate how piecewise regression can be used to identify the presence and timing of potential shifts in a variety of biological responses using multiple biotelemetry data streams. Different biological latent states can be inferred by partitioning a time‐series into multiple segments based on changes in modelled responses (e.g. their mean, variance, trend, degree of autocorrelation) and specifying a unique model structure for each interval. 3. We provide six example applications highlighting a variety of taxonomic species, data streams, timescales and biological phenomena. These examples include a short‐term behavioural response (flee and return) by a trumpeter swan Cygnus buccinator following a GPS collar deployment; remote identification of parturition based on movements by a pregnant moose Alces alces; a physiological response (spike in heart‐rate) in a black bear Ursus americanus to a stressful stimulus (presence of a drone); a mortality event of a trumpeter swan signalled by changes in collar temperature and overall dynamic body acceleration; an unsupervised method for identifying the onset, return, duration and staging use of sandhill crane Antigone canadensis migration; and estimation of the transition between incubation and brood‐rearing (i.e. hatching) for a breeding trumpeter swan. 4. We implement analyses using the mcp package in R, which provides functionality for specifying and fitting a wide variety of user‐defined model structures in a Bayesian framework and methods for assessing and comparing models using information criteria and cross‐validation measures. 5. These simple modelling approaches are accessible to a wide audience and offer a straightforward means of assessing a variety of biologically relevant changes in animal behaviour.
format Online
Article
Text
id pubmed-9540865
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-95408652022-10-14 Using piecewise regression to identify biological phenomena in biotelemetry datasets Wolfson, David W. Andersen, David E. Fieberg, John R. J Anim Ecol Research Methods Guide 1. Technological advances in the field of animal tracking have greatly expanded the potential to remotely monitor animals, opening the door to exploring how animals shift their behaviour over time or respond to external stimuli. A wide variety of animal‐borne sensors can provide information on an animal's location, movement characteristics, external environmental conditions and internal physiological status. 2. Here, we demonstrate how piecewise regression can be used to identify the presence and timing of potential shifts in a variety of biological responses using multiple biotelemetry data streams. Different biological latent states can be inferred by partitioning a time‐series into multiple segments based on changes in modelled responses (e.g. their mean, variance, trend, degree of autocorrelation) and specifying a unique model structure for each interval. 3. We provide six example applications highlighting a variety of taxonomic species, data streams, timescales and biological phenomena. These examples include a short‐term behavioural response (flee and return) by a trumpeter swan Cygnus buccinator following a GPS collar deployment; remote identification of parturition based on movements by a pregnant moose Alces alces; a physiological response (spike in heart‐rate) in a black bear Ursus americanus to a stressful stimulus (presence of a drone); a mortality event of a trumpeter swan signalled by changes in collar temperature and overall dynamic body acceleration; an unsupervised method for identifying the onset, return, duration and staging use of sandhill crane Antigone canadensis migration; and estimation of the transition between incubation and brood‐rearing (i.e. hatching) for a breeding trumpeter swan. 4. We implement analyses using the mcp package in R, which provides functionality for specifying and fitting a wide variety of user‐defined model structures in a Bayesian framework and methods for assessing and comparing models using information criteria and cross‐validation measures. 5. These simple modelling approaches are accessible to a wide audience and offer a straightforward means of assessing a variety of biologically relevant changes in animal behaviour. John Wiley and Sons Inc. 2022-07-31 2022-09 /pmc/articles/PMC9540865/ /pubmed/35852382 http://dx.doi.org/10.1111/1365-2656.13779 Text en © 2022 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Methods Guide
Wolfson, David W.
Andersen, David E.
Fieberg, John R.
Using piecewise regression to identify biological phenomena in biotelemetry datasets
title Using piecewise regression to identify biological phenomena in biotelemetry datasets
title_full Using piecewise regression to identify biological phenomena in biotelemetry datasets
title_fullStr Using piecewise regression to identify biological phenomena in biotelemetry datasets
title_full_unstemmed Using piecewise regression to identify biological phenomena in biotelemetry datasets
title_short Using piecewise regression to identify biological phenomena in biotelemetry datasets
title_sort using piecewise regression to identify biological phenomena in biotelemetry datasets
topic Research Methods Guide
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9540865/
https://www.ncbi.nlm.nih.gov/pubmed/35852382
http://dx.doi.org/10.1111/1365-2656.13779
work_keys_str_mv AT wolfsondavidw usingpiecewiseregressiontoidentifybiologicalphenomenainbiotelemetrydatasets
AT andersendavide usingpiecewiseregressiontoidentifybiologicalphenomenainbiotelemetrydatasets
AT fiebergjohnr usingpiecewiseregressiontoidentifybiologicalphenomenainbiotelemetrydatasets