Cargando…
Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response
BACKGROUND: Plant-specific BURP domain-containing genes are involved in plant development and stress responses. However, the role of BURP family in jujube (Ziziphus jujuba Mill.) has not been investigated. RESULTS: In this study, 17 BURP genes belonging to four subfamilies were identified in jujube...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541082/ https://www.ncbi.nlm.nih.gov/pubmed/36203136 http://dx.doi.org/10.1186/s12864-022-08907-9 |
_version_ | 1784803846912999424 |
---|---|
author | Wang, Wenzhu Zhang, Zhong Li, Xingang |
author_facet | Wang, Wenzhu Zhang, Zhong Li, Xingang |
author_sort | Wang, Wenzhu |
collection | PubMed |
description | BACKGROUND: Plant-specific BURP domain-containing genes are involved in plant development and stress responses. However, the role of BURP family in jujube (Ziziphus jujuba Mill.) has not been investigated. RESULTS: In this study, 17 BURP genes belonging to four subfamilies were identified in jujube based on homology analysis, gene structures, and conserved motif confirmation. Gene duplication analysis indicated both tandem duplication and segmental duplication had contributed to ZjBURP expansion. The ZjBURPs were extensively expressed in flowers, young fruits, and jujube leaves. Transcriptomic data and qRT-PCR analysis further revealed that ZjBURPs also significantly influence fruit development, and most genes could be induced by low temperature, salinity, and drought stresses. Notably, several BURP genes significantly altered expression in response to low temperature (ZjPG1) and drought stresses (ZjBNM7, ZjBNM8, and ZjBNM9). CONCLUSIONS: These results provided insights into the possible roles of ZjBURPs in jujube development and stress response. These findings would help selecting candidate ZjBURP genes for cold- and drought-tolerant jujube breeding. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08907-9. |
format | Online Article Text |
id | pubmed-9541082 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-95410822022-10-08 Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response Wang, Wenzhu Zhang, Zhong Li, Xingang BMC Genomics Research BACKGROUND: Plant-specific BURP domain-containing genes are involved in plant development and stress responses. However, the role of BURP family in jujube (Ziziphus jujuba Mill.) has not been investigated. RESULTS: In this study, 17 BURP genes belonging to four subfamilies were identified in jujube based on homology analysis, gene structures, and conserved motif confirmation. Gene duplication analysis indicated both tandem duplication and segmental duplication had contributed to ZjBURP expansion. The ZjBURPs were extensively expressed in flowers, young fruits, and jujube leaves. Transcriptomic data and qRT-PCR analysis further revealed that ZjBURPs also significantly influence fruit development, and most genes could be induced by low temperature, salinity, and drought stresses. Notably, several BURP genes significantly altered expression in response to low temperature (ZjPG1) and drought stresses (ZjBNM7, ZjBNM8, and ZjBNM9). CONCLUSIONS: These results provided insights into the possible roles of ZjBURPs in jujube development and stress response. These findings would help selecting candidate ZjBURP genes for cold- and drought-tolerant jujube breeding. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08907-9. BioMed Central 2022-10-06 /pmc/articles/PMC9541082/ /pubmed/36203136 http://dx.doi.org/10.1186/s12864-022-08907-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wang, Wenzhu Zhang, Zhong Li, Xingang Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title | Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title_full | Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title_fullStr | Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title_full_unstemmed | Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title_short | Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response |
title_sort | identification and expression analysis of burp domain-containing genes in jujube and their involvement in low temperature and drought response |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541082/ https://www.ncbi.nlm.nih.gov/pubmed/36203136 http://dx.doi.org/10.1186/s12864-022-08907-9 |
work_keys_str_mv | AT wangwenzhu identificationandexpressionanalysisofburpdomaincontaininggenesinjujubeandtheirinvolvementinlowtemperatureanddroughtresponse AT zhangzhong identificationandexpressionanalysisofburpdomaincontaininggenesinjujubeandtheirinvolvementinlowtemperatureanddroughtresponse AT lixingang identificationandexpressionanalysisofburpdomaincontaininggenesinjujubeandtheirinvolvementinlowtemperatureanddroughtresponse |