Cargando…

RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management

RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventiona...

Descripción completa

Detalles Bibliográficos
Autores principales: List, Fabian, Tarone, Aaron M, Zhu‐Salzman, Keyan, Vargo, Edward L
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541735/
https://www.ncbi.nlm.nih.gov/pubmed/35338587
http://dx.doi.org/10.1002/ps.6884
_version_ 1784803990514434048
author List, Fabian
Tarone, Aaron M
Zhu‐Salzman, Keyan
Vargo, Edward L
author_facet List, Fabian
Tarone, Aaron M
Zhu‐Salzman, Keyan
Vargo, Edward L
author_sort List, Fabian
collection PubMed
description RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventional pesticides despite several theoretical advantages in safety and specificity. As a first step toward a more standardized approach, a machine learning algorithm was used to identify factors that predict trial efficacy. Current research on RNAi for pest management is highly variable and relatively unstandardized. The applied random forest model was able to reliably predict mortality ranges based on bioassay parameters with 72.6% accuracy. Response time and target gene were the most important variables in the model, followed by applied dose, double‐stranded RNA (dsRNA) construct size and target species, further supported by generalized linear mixed effect modeling. Our results identified informative trends, supporting the idea that basic principles of toxicology apply to RNAi bioassays and provide initial guidelines standardizing future research similar to studies of traditional insecticides. We advocate for training that integrates genetic, organismal, and toxicological approaches to accelerate the development of RNAi as an effective tool for pest management. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
format Online
Article
Text
id pubmed-9541735
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley & Sons, Ltd.
record_format MEDLINE/PubMed
spelling pubmed-95417352022-10-14 RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management List, Fabian Tarone, Aaron M Zhu‐Salzman, Keyan Vargo, Edward L Pest Manag Sci Review RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventional pesticides despite several theoretical advantages in safety and specificity. As a first step toward a more standardized approach, a machine learning algorithm was used to identify factors that predict trial efficacy. Current research on RNAi for pest management is highly variable and relatively unstandardized. The applied random forest model was able to reliably predict mortality ranges based on bioassay parameters with 72.6% accuracy. Response time and target gene were the most important variables in the model, followed by applied dose, double‐stranded RNA (dsRNA) construct size and target species, further supported by generalized linear mixed effect modeling. Our results identified informative trends, supporting the idea that basic principles of toxicology apply to RNAi bioassays and provide initial guidelines standardizing future research similar to studies of traditional insecticides. We advocate for training that integrates genetic, organismal, and toxicological approaches to accelerate the development of RNAi as an effective tool for pest management. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. John Wiley & Sons, Ltd. 2022-04-12 2022-08 /pmc/articles/PMC9541735/ /pubmed/35338587 http://dx.doi.org/10.1002/ps.6884 Text en © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Review
List, Fabian
Tarone, Aaron M
Zhu‐Salzman, Keyan
Vargo, Edward L
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title_full RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title_fullStr RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title_full_unstemmed RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title_short RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
title_sort rna meets toxicology: efficacy indicators from the experimental design of rnai studies for insect pest management
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541735/
https://www.ncbi.nlm.nih.gov/pubmed/35338587
http://dx.doi.org/10.1002/ps.6884
work_keys_str_mv AT listfabian rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement
AT taroneaaronm rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement
AT zhusalzmankeyan rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement
AT vargoedwardl rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement