Cargando…
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management
RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventiona...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Ltd.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541735/ https://www.ncbi.nlm.nih.gov/pubmed/35338587 http://dx.doi.org/10.1002/ps.6884 |
_version_ | 1784803990514434048 |
---|---|
author | List, Fabian Tarone, Aaron M Zhu‐Salzman, Keyan Vargo, Edward L |
author_facet | List, Fabian Tarone, Aaron M Zhu‐Salzman, Keyan Vargo, Edward L |
author_sort | List, Fabian |
collection | PubMed |
description | RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventional pesticides despite several theoretical advantages in safety and specificity. As a first step toward a more standardized approach, a machine learning algorithm was used to identify factors that predict trial efficacy. Current research on RNAi for pest management is highly variable and relatively unstandardized. The applied random forest model was able to reliably predict mortality ranges based on bioassay parameters with 72.6% accuracy. Response time and target gene were the most important variables in the model, followed by applied dose, double‐stranded RNA (dsRNA) construct size and target species, further supported by generalized linear mixed effect modeling. Our results identified informative trends, supporting the idea that basic principles of toxicology apply to RNAi bioassays and provide initial guidelines standardizing future research similar to studies of traditional insecticides. We advocate for training that integrates genetic, organismal, and toxicological approaches to accelerate the development of RNAi as an effective tool for pest management. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. |
format | Online Article Text |
id | pubmed-9541735 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95417352022-10-14 RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management List, Fabian Tarone, Aaron M Zhu‐Salzman, Keyan Vargo, Edward L Pest Manag Sci Review RNA interference (RNAi) selectively targets genes and silences their expression in vivo, causing developmental defects, mortality and altered behavior. Consequently, RNAi has emerged as a promising research area for insect pest management. However, it is not yet a viable alternative over conventional pesticides despite several theoretical advantages in safety and specificity. As a first step toward a more standardized approach, a machine learning algorithm was used to identify factors that predict trial efficacy. Current research on RNAi for pest management is highly variable and relatively unstandardized. The applied random forest model was able to reliably predict mortality ranges based on bioassay parameters with 72.6% accuracy. Response time and target gene were the most important variables in the model, followed by applied dose, double‐stranded RNA (dsRNA) construct size and target species, further supported by generalized linear mixed effect modeling. Our results identified informative trends, supporting the idea that basic principles of toxicology apply to RNAi bioassays and provide initial guidelines standardizing future research similar to studies of traditional insecticides. We advocate for training that integrates genetic, organismal, and toxicological approaches to accelerate the development of RNAi as an effective tool for pest management. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. John Wiley & Sons, Ltd. 2022-04-12 2022-08 /pmc/articles/PMC9541735/ /pubmed/35338587 http://dx.doi.org/10.1002/ps.6884 Text en © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Review List, Fabian Tarone, Aaron M Zhu‐Salzman, Keyan Vargo, Edward L RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title |
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title_full |
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title_fullStr |
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title_full_unstemmed |
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title_short |
RNA meets toxicology: efficacy indicators from the experimental design of RNAi studies for insect pest management |
title_sort | rna meets toxicology: efficacy indicators from the experimental design of rnai studies for insect pest management |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9541735/ https://www.ncbi.nlm.nih.gov/pubmed/35338587 http://dx.doi.org/10.1002/ps.6884 |
work_keys_str_mv | AT listfabian rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement AT taroneaaronm rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement AT zhusalzmankeyan rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement AT vargoedwardl rnameetstoxicologyefficacyindicatorsfromtheexperimentaldesignofrnaistudiesforinsectpestmanagement |