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Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma
Lung cancer (LC) is a common malignancy with high mortality rate, and lung adenocarcinoma (LUAD) is one of the common pathological types. Cuproptosis is a recently discovered new type of cell death dependent on mitochondria. However, the role of cuproptosis in LUAD is unknown. We obtained LUAD trans...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9542578/ https://www.ncbi.nlm.nih.gov/pubmed/36221373 http://dx.doi.org/10.1097/MD.0000000000030446 |
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author | Ye, Wei Huang, Yuenuo Li, Xingxing |
author_facet | Ye, Wei Huang, Yuenuo Li, Xingxing |
author_sort | Ye, Wei |
collection | PubMed |
description | Lung cancer (LC) is a common malignancy with high mortality rate, and lung adenocarcinoma (LUAD) is one of the common pathological types. Cuproptosis is a recently discovered new type of cell death dependent on mitochondria. However, the role of cuproptosis in LUAD is unknown. We obtained LUAD transcriptome data from the Cancer Genome Atlas (TCGA). Long-stranded non-coding RNA (LncRNAs) based on cuproptosis prognosis associated with LUAD were constructed for prognostic multi-LncRNA characterization. We divided TCGA-LUAD into training set and validation set to prove feasibility, and all samples were divided into high-risk group or low risk group. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were used to evaluate potential biological functions and explore the relationship between risk models and immunity. We identified 3 differentially expressed LncRNAs associated with LUAD prognosis and constructed prognostic model. Kaplan–Meier (K-M) analysis revealed prognostic model and LUAD prognosis. Our risk assessment model has a good reliability in predicting the prognosis of LUAD and was able to improve predictive ability of tumor mutational burdern. Single sample gene enrichment analysis (ssGSEA) revealed risk subgroups were associated with immune-related functions. The prognostic model based on cuproptosis lncRNA has important value in predicting the survival of LUAD patients. |
format | Online Article Text |
id | pubmed-9542578 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-95425782022-10-11 Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma Ye, Wei Huang, Yuenuo Li, Xingxing Medicine (Baltimore) Research Article Lung cancer (LC) is a common malignancy with high mortality rate, and lung adenocarcinoma (LUAD) is one of the common pathological types. Cuproptosis is a recently discovered new type of cell death dependent on mitochondria. However, the role of cuproptosis in LUAD is unknown. We obtained LUAD transcriptome data from the Cancer Genome Atlas (TCGA). Long-stranded non-coding RNA (LncRNAs) based on cuproptosis prognosis associated with LUAD were constructed for prognostic multi-LncRNA characterization. We divided TCGA-LUAD into training set and validation set to prove feasibility, and all samples were divided into high-risk group or low risk group. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were used to evaluate potential biological functions and explore the relationship between risk models and immunity. We identified 3 differentially expressed LncRNAs associated with LUAD prognosis and constructed prognostic model. Kaplan–Meier (K-M) analysis revealed prognostic model and LUAD prognosis. Our risk assessment model has a good reliability in predicting the prognosis of LUAD and was able to improve predictive ability of tumor mutational burdern. Single sample gene enrichment analysis (ssGSEA) revealed risk subgroups were associated with immune-related functions. The prognostic model based on cuproptosis lncRNA has important value in predicting the survival of LUAD patients. Lippincott Williams & Wilkins 2022-10-07 /pmc/articles/PMC9542578/ /pubmed/36221373 http://dx.doi.org/10.1097/MD.0000000000030446 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | Research Article Ye, Wei Huang, Yuenuo Li, Xingxing Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title | Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title_full | Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title_fullStr | Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title_full_unstemmed | Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title_short | Cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
title_sort | cuproptosis-related gene signatures for predicting prognosis of lung adenocarcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9542578/ https://www.ncbi.nlm.nih.gov/pubmed/36221373 http://dx.doi.org/10.1097/MD.0000000000030446 |
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