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Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder

Vascular remodeling is common in human cancer and has potential as future biomarkers for prediction of disease progression and tumor immunity status. It can also affect metastatic sites, including the tumor‐draining lymph nodes (TDLNs). Dilation of the high endothelial venules (HEVs) within TDLNs ha...

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Autores principales: Bekkhus, Tove, Avenel, Christophe, Hanna, Sabella, Franzén Boger, Mathias, Klemm, Anna, Bacovia, Daniel Vasiliu, Wärnberg, Fredrik, Wählby, Carolina, Ulvmar, Maria H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9543492/
https://www.ncbi.nlm.nih.gov/pubmed/35696253
http://dx.doi.org/10.1002/path.5981
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author Bekkhus, Tove
Avenel, Christophe
Hanna, Sabella
Franzén Boger, Mathias
Klemm, Anna
Bacovia, Daniel Vasiliu
Wärnberg, Fredrik
Wählby, Carolina
Ulvmar, Maria H
author_facet Bekkhus, Tove
Avenel, Christophe
Hanna, Sabella
Franzén Boger, Mathias
Klemm, Anna
Bacovia, Daniel Vasiliu
Wärnberg, Fredrik
Wählby, Carolina
Ulvmar, Maria H
author_sort Bekkhus, Tove
collection PubMed
description Vascular remodeling is common in human cancer and has potential as future biomarkers for prediction of disease progression and tumor immunity status. It can also affect metastatic sites, including the tumor‐draining lymph nodes (TDLNs). Dilation of the high endothelial venules (HEVs) within TDLNs has been observed in several types of cancer. We recently demonstrated that it is a premetastatic effect that can be linked to tumor invasiveness in breast cancer. Manual visual assessment of changes in vascular morphology is a tedious and difficult task, limiting high‐throughput analysis. Here we present a fully automated approach for detection and classification of HEV dilation. By using 12,524 manually classified HEVs, we trained a deep‐learning model and created a graphical user interface for visualization of the results. The tool, named the HEV‐finder, selectively analyses HEV dilation in specific regions of the lymph nodes. We evaluated the HEV‐finder's ability to detect and classify HEV dilation in different types of breast cancer compared to manual annotations. Our results constitute a successful example of large‐scale, fully automated, and user‐independent, image‐based quantitative assessment of vascular remodeling in human pathology and lay the ground for future exploration of HEV dilation in TDLNs as a biomarker. © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.
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spelling pubmed-95434922022-10-14 Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder Bekkhus, Tove Avenel, Christophe Hanna, Sabella Franzén Boger, Mathias Klemm, Anna Bacovia, Daniel Vasiliu Wärnberg, Fredrik Wählby, Carolina Ulvmar, Maria H J Pathol Brief Report Vascular remodeling is common in human cancer and has potential as future biomarkers for prediction of disease progression and tumor immunity status. It can also affect metastatic sites, including the tumor‐draining lymph nodes (TDLNs). Dilation of the high endothelial venules (HEVs) within TDLNs has been observed in several types of cancer. We recently demonstrated that it is a premetastatic effect that can be linked to tumor invasiveness in breast cancer. Manual visual assessment of changes in vascular morphology is a tedious and difficult task, limiting high‐throughput analysis. Here we present a fully automated approach for detection and classification of HEV dilation. By using 12,524 manually classified HEVs, we trained a deep‐learning model and created a graphical user interface for visualization of the results. The tool, named the HEV‐finder, selectively analyses HEV dilation in specific regions of the lymph nodes. We evaluated the HEV‐finder's ability to detect and classify HEV dilation in different types of breast cancer compared to manual annotations. Our results constitute a successful example of large‐scale, fully automated, and user‐independent, image‐based quantitative assessment of vascular remodeling in human pathology and lay the ground for future exploration of HEV dilation in TDLNs as a biomarker. © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland. John Wiley & Sons, Ltd 2022-07-12 2022-09 /pmc/articles/PMC9543492/ /pubmed/35696253 http://dx.doi.org/10.1002/path.5981 Text en © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Brief Report
Bekkhus, Tove
Avenel, Christophe
Hanna, Sabella
Franzén Boger, Mathias
Klemm, Anna
Bacovia, Daniel Vasiliu
Wärnberg, Fredrik
Wählby, Carolina
Ulvmar, Maria H
Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title_full Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title_fullStr Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title_full_unstemmed Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title_short Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
title_sort automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool hev‐finder
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9543492/
https://www.ncbi.nlm.nih.gov/pubmed/35696253
http://dx.doi.org/10.1002/path.5981
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