Microbial community succession in steam‐sterilized greenhouses infected with Fusarium oxysporum

Fusarium is an economically important crop pathogen but spends a large part of its life cycle in bulk soil environments where it interacts with a diverse community of soil microbes. Antagonistic interactions (e.g. competition) between the resident microbial community and Fusarium could constrain the growth of Fusarium in soil, which might therefore slow or prevent Fusarium establishment. We tracked Fusarium oxysporum in floriculture greenhouses where the soil had been steam‐sterilized to remove Fusarium. The data indicated a resurgence of soil bacteria and fungi during the first 90 days post‐sterilization, followed by a rapid decline in subsequent weeks, which was associated with an increase in F. oxysporum abundance at 148 days post sterilization. These changes over time were associated with successional changes in the bacterial but not the fungal communities. The results illustrate that, although soil steaming clears Fusarium in the short term, it may exacerbate re‐emergence as the resident community is continually depleted by the steaming process while Fusarium benefits from nutrients released by steaming. Observations suggest combining steaming with microbial inoculations could help reduce the recovery of Fusarium reducing the fungal load in the first instance and preventing subsequent build‐up by giving a head start to its saprophytic competitors.