Cargando…

The genomic landscape of blood groups in Indigenous Australians in remote communities

BACKGROUND: Red blood cell (RBC) membrane‐associated blood group systems are clinically significant. Alloimmunisation is a persistent risk associated with blood transfusion owing to the antigen polymorphisms among these RBC‐associated blood groups. Next‐generation sequencing (NGS) offers an opportun...

Descripción completa

Detalles Bibliográficos
Autores principales: Jadhao, Sudhir, Hoy, Wendy, Lee, Simon, Patel, Hardip R., McMorran, Brendan J., Flower, Robert L., Nagaraj, Shivashankar H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9544628/
https://www.ncbi.nlm.nih.gov/pubmed/35403234
http://dx.doi.org/10.1111/trf.16873
_version_ 1784804638837440512
author Jadhao, Sudhir
Hoy, Wendy
Lee, Simon
Patel, Hardip R.
McMorran, Brendan J.
Flower, Robert L.
Nagaraj, Shivashankar H.
author_facet Jadhao, Sudhir
Hoy, Wendy
Lee, Simon
Patel, Hardip R.
McMorran, Brendan J.
Flower, Robert L.
Nagaraj, Shivashankar H.
author_sort Jadhao, Sudhir
collection PubMed
description BACKGROUND: Red blood cell (RBC) membrane‐associated blood group systems are clinically significant. Alloimmunisation is a persistent risk associated with blood transfusion owing to the antigen polymorphisms among these RBC‐associated blood groups. Next‐generation sequencing (NGS) offers an opportunity to characterize the blood group variant profile of a given individual. Australia comprises a large multiethnic population where most blood donors are Caucasian and blood group variants remain poorly studied among Indigenous Australians. In this study, we focused on the Tiwi Islanders, who have lived in relative isolation for thousands of years. METHODS AND MATERIALS: We predicted the blood group phenotype profiles in the Tiwi (457) and 1000 Genomes Phase 3 (1KGP3‐2504) cohort individuals using RBCeq (https://www.rbceq.org/). The predicted phenotype prevalence was compared with the previous literature report. RESULTS: We report, for the first time, comprehensive blood group profiles corresponding to the 35 known blood group systems among the Indigenous Tiwi islander population and identify possible novel antigen variants therein. Our results demonstrate that the genetic makeup of the Tiwi participants is distinct from that of other populations, with a low prevalence of LU (Au[a−b+]) and ABO (A2) and D+C+c+E+e− phenotype, an absence of Diego blood group variants, and a unique RHD (DIII type4) variant. CONCLUSION: Our results may contribute to the development of a database of predicted phenotype donors among the Tiwi population and aid in improving transfusion safety for the ~2800 Tiwi people and the ~800,000 other Indigenous Australians throughout the nation.
format Online
Article
Text
id pubmed-9544628
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley & Sons, Inc.
record_format MEDLINE/PubMed
spelling pubmed-95446282022-10-14 The genomic landscape of blood groups in Indigenous Australians in remote communities Jadhao, Sudhir Hoy, Wendy Lee, Simon Patel, Hardip R. McMorran, Brendan J. Flower, Robert L. Nagaraj, Shivashankar H. Transfusion Blood Group Genomics BACKGROUND: Red blood cell (RBC) membrane‐associated blood group systems are clinically significant. Alloimmunisation is a persistent risk associated with blood transfusion owing to the antigen polymorphisms among these RBC‐associated blood groups. Next‐generation sequencing (NGS) offers an opportunity to characterize the blood group variant profile of a given individual. Australia comprises a large multiethnic population where most blood donors are Caucasian and blood group variants remain poorly studied among Indigenous Australians. In this study, we focused on the Tiwi Islanders, who have lived in relative isolation for thousands of years. METHODS AND MATERIALS: We predicted the blood group phenotype profiles in the Tiwi (457) and 1000 Genomes Phase 3 (1KGP3‐2504) cohort individuals using RBCeq (https://www.rbceq.org/). The predicted phenotype prevalence was compared with the previous literature report. RESULTS: We report, for the first time, comprehensive blood group profiles corresponding to the 35 known blood group systems among the Indigenous Tiwi islander population and identify possible novel antigen variants therein. Our results demonstrate that the genetic makeup of the Tiwi participants is distinct from that of other populations, with a low prevalence of LU (Au[a−b+]) and ABO (A2) and D+C+c+E+e− phenotype, an absence of Diego blood group variants, and a unique RHD (DIII type4) variant. CONCLUSION: Our results may contribute to the development of a database of predicted phenotype donors among the Tiwi population and aid in improving transfusion safety for the ~2800 Tiwi people and the ~800,000 other Indigenous Australians throughout the nation. John Wiley & Sons, Inc. 2022-04-11 2022-05 /pmc/articles/PMC9544628/ /pubmed/35403234 http://dx.doi.org/10.1111/trf.16873 Text en © 2022 The Authors. Transfusion published by Wiley Periodicals LLC on behalf of AABB. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Blood Group Genomics
Jadhao, Sudhir
Hoy, Wendy
Lee, Simon
Patel, Hardip R.
McMorran, Brendan J.
Flower, Robert L.
Nagaraj, Shivashankar H.
The genomic landscape of blood groups in Indigenous Australians in remote communities
title The genomic landscape of blood groups in Indigenous Australians in remote communities
title_full The genomic landscape of blood groups in Indigenous Australians in remote communities
title_fullStr The genomic landscape of blood groups in Indigenous Australians in remote communities
title_full_unstemmed The genomic landscape of blood groups in Indigenous Australians in remote communities
title_short The genomic landscape of blood groups in Indigenous Australians in remote communities
title_sort genomic landscape of blood groups in indigenous australians in remote communities
topic Blood Group Genomics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9544628/
https://www.ncbi.nlm.nih.gov/pubmed/35403234
http://dx.doi.org/10.1111/trf.16873
work_keys_str_mv AT jadhaosudhir thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT hoywendy thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT leesimon thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT patelhardipr thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT mcmorranbrendanj thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT flowerrobertl thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT nagarajshivashankarh thegenomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT jadhaosudhir genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT hoywendy genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT leesimon genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT patelhardipr genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT mcmorranbrendanj genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT flowerrobertl genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities
AT nagarajshivashankarh genomiclandscapeofbloodgroupsinindigenousaustraliansinremotecommunities