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Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well‐being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major cha...

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Autores principales: Hoban, Sean, Archer, Frederick I., Bertola, Laura D., Bragg, Jason G., Breed, Martin F., Bruford, Michael W., Coleman, Melinda A., Ekblom, Robert, Funk, W. Chris, Grueber, Catherine E., Hand, Brian K., Jaffé, Rodolfo, Jensen, Evelyn, Johnson, Jeremy S., Kershaw, Francine, Liggins, Libby, MacDonald, Anna J., Mergeay, Joachim, Miller, Joshua M., Muller‐Karger, Frank, O'Brien, David, Paz‐Vinas, Ivan, Potter, Kevin M., Razgour, Orly, Vernesi, Cristiano, Hunter, Margaret E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9545166/
https://www.ncbi.nlm.nih.gov/pubmed/35415952
http://dx.doi.org/10.1111/brv.12852
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author Hoban, Sean
Archer, Frederick I.
Bertola, Laura D.
Bragg, Jason G.
Breed, Martin F.
Bruford, Michael W.
Coleman, Melinda A.
Ekblom, Robert
Funk, W. Chris
Grueber, Catherine E.
Hand, Brian K.
Jaffé, Rodolfo
Jensen, Evelyn
Johnson, Jeremy S.
Kershaw, Francine
Liggins, Libby
MacDonald, Anna J.
Mergeay, Joachim
Miller, Joshua M.
Muller‐Karger, Frank
O'Brien, David
Paz‐Vinas, Ivan
Potter, Kevin M.
Razgour, Orly
Vernesi, Cristiano
Hunter, Margaret E.
author_facet Hoban, Sean
Archer, Frederick I.
Bertola, Laura D.
Bragg, Jason G.
Breed, Martin F.
Bruford, Michael W.
Coleman, Melinda A.
Ekblom, Robert
Funk, W. Chris
Grueber, Catherine E.
Hand, Brian K.
Jaffé, Rodolfo
Jensen, Evelyn
Johnson, Jeremy S.
Kershaw, Francine
Liggins, Libby
MacDonald, Anna J.
Mergeay, Joachim
Miller, Joshua M.
Muller‐Karger, Frank
O'Brien, David
Paz‐Vinas, Ivan
Potter, Kevin M.
Razgour, Orly
Vernesi, Cristiano
Hunter, Margaret E.
author_sort Hoban, Sean
collection PubMed
description Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well‐being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within‐species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: (i) Genetic Diversity; (ii) Genetic Differentiation; (iii) Inbreeding; and (iv) Effective Population Size (N (e)). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large‐scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long‐term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.
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spelling pubmed-95451662022-10-14 Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition Hoban, Sean Archer, Frederick I. Bertola, Laura D. Bragg, Jason G. Breed, Martin F. Bruford, Michael W. Coleman, Melinda A. Ekblom, Robert Funk, W. Chris Grueber, Catherine E. Hand, Brian K. Jaffé, Rodolfo Jensen, Evelyn Johnson, Jeremy S. Kershaw, Francine Liggins, Libby MacDonald, Anna J. Mergeay, Joachim Miller, Joshua M. Muller‐Karger, Frank O'Brien, David Paz‐Vinas, Ivan Potter, Kevin M. Razgour, Orly Vernesi, Cristiano Hunter, Margaret E. Biol Rev Camb Philos Soc Original Articles Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well‐being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within‐species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: (i) Genetic Diversity; (ii) Genetic Differentiation; (iii) Inbreeding; and (iv) Effective Population Size (N (e)). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large‐scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long‐term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally. Blackwell Publishing Ltd 2022-04-12 2022-08 /pmc/articles/PMC9545166/ /pubmed/35415952 http://dx.doi.org/10.1111/brv.12852 Text en © 2022 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behlaf of Cambridge Philosophical Society. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Hoban, Sean
Archer, Frederick I.
Bertola, Laura D.
Bragg, Jason G.
Breed, Martin F.
Bruford, Michael W.
Coleman, Melinda A.
Ekblom, Robert
Funk, W. Chris
Grueber, Catherine E.
Hand, Brian K.
Jaffé, Rodolfo
Jensen, Evelyn
Johnson, Jeremy S.
Kershaw, Francine
Liggins, Libby
MacDonald, Anna J.
Mergeay, Joachim
Miller, Joshua M.
Muller‐Karger, Frank
O'Brien, David
Paz‐Vinas, Ivan
Potter, Kevin M.
Razgour, Orly
Vernesi, Cristiano
Hunter, Margaret E.
Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title_full Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title_fullStr Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title_full_unstemmed Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title_short Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
title_sort global genetic diversity status and trends: towards a suite of essential biodiversity variables (ebvs) for genetic composition
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9545166/
https://www.ncbi.nlm.nih.gov/pubmed/35415952
http://dx.doi.org/10.1111/brv.12852
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