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Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer

The efficiency of reduced volume PCR amplification was studied using the VeriFiler™ Express PCR Amplification Kit. Full (25 μL) and reduced (5 μL) volumes were tested in parallel to identify any differences in template DNA sensitivity and other electropherogram parameters. Both volumes produced full...

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Detalles Bibliográficos
Autores principales: Perry, Jessica, Munshi, Tasnim, Haizel, Thomas, Iyavoo, Sasitaran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546378/
https://www.ncbi.nlm.nih.gov/pubmed/35735089
http://dx.doi.org/10.1111/1556-4029.15084
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author Perry, Jessica
Munshi, Tasnim
Haizel, Thomas
Iyavoo, Sasitaran
author_facet Perry, Jessica
Munshi, Tasnim
Haizel, Thomas
Iyavoo, Sasitaran
author_sort Perry, Jessica
collection PubMed
description The efficiency of reduced volume PCR amplification was studied using the VeriFiler™ Express PCR Amplification Kit. Full (25 μL) and reduced (5 μL) volumes were tested in parallel to identify any differences in template DNA sensitivity and other electropherogram parameters. Both volumes produced full DNA profiles down to 0.08 ng/μL DNA concentration at 26 PCR cycles; however, reduced volume produced higher peak heights due to increased signal intensities. Significant difference (p‐value ≤ 0.05) in heterozygote peak height ratios was observed between both volumes, where the reduced volume threshold was lowered to 0.6 to accommodate all data points. However, no significant difference (p‐value > 0.05) was identified in the stutter ratios between both volumes. The analytical threshold for reduced volume was also determined to be 150 RFU with the presence of template DNA in PCR amplification. When the optimized reduced volume parameters were tested on DNA extracted from buccal swab samples using Prep‐n‐Go™ Buffer, good quality DNA profiles were produced. Overall, the reduced volume not only showed better results compared to the full volume, but also enable more samples to be processed with a PCR amplification kit, thus reduced the cost.
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spelling pubmed-95463782022-10-14 Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer Perry, Jessica Munshi, Tasnim Haizel, Thomas Iyavoo, Sasitaran J Forensic Sci Technical Notes The efficiency of reduced volume PCR amplification was studied using the VeriFiler™ Express PCR Amplification Kit. Full (25 μL) and reduced (5 μL) volumes were tested in parallel to identify any differences in template DNA sensitivity and other electropherogram parameters. Both volumes produced full DNA profiles down to 0.08 ng/μL DNA concentration at 26 PCR cycles; however, reduced volume produced higher peak heights due to increased signal intensities. Significant difference (p‐value ≤ 0.05) in heterozygote peak height ratios was observed between both volumes, where the reduced volume threshold was lowered to 0.6 to accommodate all data points. However, no significant difference (p‐value > 0.05) was identified in the stutter ratios between both volumes. The analytical threshold for reduced volume was also determined to be 150 RFU with the presence of template DNA in PCR amplification. When the optimized reduced volume parameters were tested on DNA extracted from buccal swab samples using Prep‐n‐Go™ Buffer, good quality DNA profiles were produced. Overall, the reduced volume not only showed better results compared to the full volume, but also enable more samples to be processed with a PCR amplification kit, thus reduced the cost. John Wiley and Sons Inc. 2022-06-23 2022-09 /pmc/articles/PMC9546378/ /pubmed/35735089 http://dx.doi.org/10.1111/1556-4029.15084 Text en © 2022 The Authors. Journal of Forensic Sciences published by Wiley Periodicals LLC on behalf of American Academy of Forensic Sciences. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Technical Notes
Perry, Jessica
Munshi, Tasnim
Haizel, Thomas
Iyavoo, Sasitaran
Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title_full Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title_fullStr Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title_full_unstemmed Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title_short Validation of reduced volume VeriFiler™ Express PCR Amplification Kit for buccal swab samples extracted using Prep‐n‐Go™ Buffer
title_sort validation of reduced volume verifiler™ express pcr amplification kit for buccal swab samples extracted using prep‐n‐go™ buffer
topic Technical Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546378/
https://www.ncbi.nlm.nih.gov/pubmed/35735089
http://dx.doi.org/10.1111/1556-4029.15084
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