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Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)
Human electrophysiological and related time series data are often acquired in complex, event-rich environments. However, the resulting recorded brain or other dynamics are often interpreted in relation to more sparsely recorded or subsequently-noted events. Currently a substantial gap exists between...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546996/ https://www.ncbi.nlm.nih.gov/pubmed/34970709 http://dx.doi.org/10.1007/s12021-021-09537-4 |
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author | Robbins, Kay Truong, Dung Jones, Alexander Callanan, Ian Makeig, Scott |
author_facet | Robbins, Kay Truong, Dung Jones, Alexander Callanan, Ian Makeig, Scott |
author_sort | Robbins, Kay |
collection | PubMed |
description | Human electrophysiological and related time series data are often acquired in complex, event-rich environments. However, the resulting recorded brain or other dynamics are often interpreted in relation to more sparsely recorded or subsequently-noted events. Currently a substantial gap exists between the level of event description required by current digital data archiving standards and the level of annotation required for successful analysis of event-related data across studies, environments, and laboratories. Manifold challenges must be addressed, most prominently ontological clarity, vocabulary extensibility, annotation tool availability, and overall usability, to allow and promote sharing of data with an effective level of descriptive detail for labeled events. Motivating data authors to perform the work needed to adequately annotate their data is a key challenge. This paper describes new developments in the Hierarchical Event Descriptor (HED) system for addressing these issues. We recap the evolution of HED and its acceptance by the Brain Imaging Data Structure (BIDS) movement, describe the recent release of HED-3G, a third generation HED tools and design framework, and discuss directions for future development. Given consistent, sufficiently detailed, tool-enabled, field-relevant annotation of the nature of recorded events, prospects are bright for large-scale analysis and modeling of aggregated time series data, both in behavioral and brain imaging sciences and beyond. |
format | Online Article Text |
id | pubmed-9546996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-95469962022-10-09 Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) Robbins, Kay Truong, Dung Jones, Alexander Callanan, Ian Makeig, Scott Neuroinformatics Article Human electrophysiological and related time series data are often acquired in complex, event-rich environments. However, the resulting recorded brain or other dynamics are often interpreted in relation to more sparsely recorded or subsequently-noted events. Currently a substantial gap exists between the level of event description required by current digital data archiving standards and the level of annotation required for successful analysis of event-related data across studies, environments, and laboratories. Manifold challenges must be addressed, most prominently ontological clarity, vocabulary extensibility, annotation tool availability, and overall usability, to allow and promote sharing of data with an effective level of descriptive detail for labeled events. Motivating data authors to perform the work needed to adequately annotate their data is a key challenge. This paper describes new developments in the Hierarchical Event Descriptor (HED) system for addressing these issues. We recap the evolution of HED and its acceptance by the Brain Imaging Data Structure (BIDS) movement, describe the recent release of HED-3G, a third generation HED tools and design framework, and discuss directions for future development. Given consistent, sufficiently detailed, tool-enabled, field-relevant annotation of the nature of recorded events, prospects are bright for large-scale analysis and modeling of aggregated time series data, both in behavioral and brain imaging sciences and beyond. Springer US 2021-12-30 2022 /pmc/articles/PMC9546996/ /pubmed/34970709 http://dx.doi.org/10.1007/s12021-021-09537-4 Text en © The Author(s) 2021, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Robbins, Kay Truong, Dung Jones, Alexander Callanan, Ian Makeig, Scott Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title | Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title_full | Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title_fullStr | Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title_full_unstemmed | Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title_short | Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED) |
title_sort | building fair functionality: annotating events in time series data using hierarchical event descriptors (hed) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546996/ https://www.ncbi.nlm.nih.gov/pubmed/34970709 http://dx.doi.org/10.1007/s12021-021-09537-4 |
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